View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_64 (Length: 320)

Name: NF1614_high_64
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_64
NF1614_high_64
[»] chr8 (4 HSPs)
chr8 (115-307)||(33174400-33174591)
chr8 (11-104)||(33174716-33174809)
chr8 (127-206)||(33175223-33175302)
chr8 (120-165)||(16583230-16583275)
[»] chr4 (11 HSPs)
chr4 (11-104)||(53897429-53897522)
chr4 (11-104)||(42077950-42078043)
chr4 (104-208)||(19438323-19438427)
chr4 (113-205)||(53896898-53896990)
chr4 (113-195)||(53897646-53897728)
chr4 (113-203)||(42078498-42078588)
chr4 (126-205)||(42077789-42077869)
chr4 (122-165)||(20855755-20855798)
chr4 (121-165)||(17915173-17915217)
chr4 (121-162)||(32715312-32715353)
chr4 (121-165)||(31302324-31302368)
[»] chr3 (8 HSPs)
chr3 (11-104)||(33840841-33840934)
chr3 (12-104)||(30287931-30288023)
chr3 (104-207)||(30288137-30288241)
chr3 (113-205)||(33840295-33840386)
chr3 (113-204)||(30287390-30287481)
chr3 (151-205)||(33841088-33841142)
chr3 (121-162)||(44809830-44809871)
chr3 (122-205)||(42993463-42993546)
[»] chr1 (6 HSPs)
chr1 (11-108)||(11701217-11701314)
chr1 (11-108)||(36858700-36858797)
chr1 (104-189)||(36858497-36858582)
chr1 (123-187)||(10220997-10221061)
chr1 (123-178)||(11701088-11701143)
chr1 (113-187)||(11701771-11701845)
[»] chr2 (4 HSPs)
chr2 (17-102)||(4424721-4424805)
chr2 (11-65)||(37203097-37203151)
chr2 (50-108)||(37203025-37203083)
chr2 (104-205)||(37202813-37202913)
[»] chr7 (3 HSPs)
chr7 (11-108)||(18665493-18665583)
chr7 (113-204)||(18665312-18665403)
chr7 (121-165)||(1295984-1296028)
[»] chr6 (1 HSPs)
chr6 (120-205)||(32132804-32132889)
[»] chr5 (1 HSPs)
chr5 (121-165)||(26747734-26747778)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 115 - 307
Target Start/End: Complemental strand, 33174591 - 33174400
Alignment:
Q  115 cttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttcttacaatat 214  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  33174591 cttagcccagcggtagttaactaccgccggaggctctttaataaattatttatgtcattgtgaagttctcaatgtcaaaaa-acaattttcttgcaatat 33174493  T
Q  215 agttcaaaggaccattattaatggctctacaatcagataaggtctctttcaatgagccttgatacagtgctaagtagcccacaaatataattg 307  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33174492 agttcaaaggaccattattaatggctctacaaacagataaggtctctttcaatgagccttgatacagtgctaagtagcccacaaatataattg 33174400  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 33174809 - 33174716
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33174809 gggttcaggttttgttgacattaattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 33174716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 33175223 - 33175302
Alignment:
Q  127 gtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttct 206  Q
    ||||||||||| ||||  ||||| ||||||||||||||| || ||||||||||||||||||||||||||  |||||||||    
T  33175223 gtagttaactagcgctagaggctatttaataaattacttgtgtcattgtgaagttctcaatgtcagaaaagcaattttct 33175302  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 16583275 - 16583230
Alignment:
Q  120 cccaacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    ||||||||||||||||||||||||  |||| |||| ||||||||||    
T  16583275 cccaacggtagttaactaccgctgggggctttttagtaaattactt 16583230  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 53897429 - 53897522
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  53897429 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgatcgaatctcattcttgttcctaaaaaagagcaacaacaaca 53897522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 42078043 - 42077950
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 104  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42078043 gggttcaagttttgttgacattgattcaatttatttgtatttattttatgtgattgaaacccattcttgttcctaaaaaagagcaacaacaaca 42077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 19438427 - 19438323
Alignment:
Q  104 aacaaccgtcgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattt 203  Q
    |||||||| |||||||||||||||||||||||||||||||  |||| |||| |||||||||| || |||||||||||||||||| ||| |||  ||||||    
T  19438427 aacaaccgccgcttagcccaacggtagttaactaccgctgggggctatttagtaaattacttgtgtcattgtgaagttctcaatatcataaaagcaattt 19438328  T
Q  204 tctta 208  Q
    |||||    
T  19438327 tctta 19438323  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 53896990 - 53896898
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    |||||| ||||||||||||||||||||||||  |||| |||| |||||||||| || ||||||||||||||||||||||||||  ||||||||    
T  53896990 cgcttaacccaacggtagttaactaccgctgggggctatttagtaaattacttctgtcattgtgaagttctcaatgtcagaaaagcaattttc 53896898  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 53897646 - 53897728
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaa 195  Q
    |||||||||||||| ||||||||||||||||  |||| |||| |||||||||| || ||||||||||||||||||||||||||    
T  53897646 cgcttagcccaacgatagttaactaccgctgggggctatttagtaaattacttgtgtcattgtgaagttctcaatgtcagaaa 53897728  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 42078498 - 42078588
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattt 203  Q
    ||||||| |||||| |||||||||||| ||||||||| |||||||||||| || || |||| ||||||| ||||||||||||| |||||||    
T  42078498 cgcttagtccaacgatagttaactaccactgaaggctatttaataaattatttgtgtcattctgaagttttcaatgtcagaaaaacaattt 42078588  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 42077869 - 42077789
Alignment:
Q  126 ggtagttaactaccgctgaaggctctttaataaa-ttacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    ||||||||||||| ||||  |||| |||| |||| ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  42077869 ggtagttaactactgctgggggctatttagtaaagttacttatgtcattgtgaagttctcaatgtcagaaaagcaattttc 42077789  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 20855755 - 20855798
Alignment:
Q  122 caacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  20855755 caacggtagttaactaccgctgaaggctttttaataaattactt 20855798  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 17915217 - 17915173
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    |||||||||||||||||||||||  |||| |||||||||||||||    
T  17915217 ccaacggtagttaactaccgctgggggctttttaataaattactt 17915173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 32715353 - 32715312
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaatta 162  Q
    ||||||||||||||||||||||| ||||| |||| |||||||    
T  32715353 ccaacggtagttaactaccgctggaggctttttagtaaatta 32715312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 31302368 - 31302324
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    ||||||||||||||||| ||||| ||||| ||| |||||||||||    
T  31302368 ccaacggtagttaactatcgctggaggctttttgataaattactt 31302324  T

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Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 33840841 - 33840934
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 104  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840841 gggttcaggctgtgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 33840934  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 30287931 - 30288023
Alignment:
Q  12 ggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaaca 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30287931 ggttaaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaacccattcttgttcctaaaaaagagcaacaacaaca 30288023  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 30288137 - 30288241
Alignment:
Q  104 aacaaccgtcgcttagcccaa-cggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaatt 202  Q
    |||| ||| |||||||||||| | |||||||||||||||||| |||| |||| |||||||||| || ||||||||||||||||||||||||||  |||||    
T  30288137 aacagccgccgcttagcccaaacagtagttaactaccgctgagggctatttagtaaattacttgtgtcattgtgaagttctcaatgtcagaaaatcaatt 30288236  T
Q  203 ttctt 207  Q
    |||||    
T  30288237 ttctt 30288241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 33840386 - 33840295
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    |||||||||||||| | ||||||||||||||  |||| ||||||||||||||| || |||||||||||||||||| |||||||  ||||||||    
T  33840386 cgcttagcccaacgattgttaactaccgctgg-ggctatttaataaattacttgtgtcattgtgaagttctcaatatcagaaaagcaattttc 33840295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 30287481 - 30287390
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaatttt 204  Q
    ||||||||||||| ||| ||||||||  | ||| ||| ||||||||||||||| ||  ||||||||||||||||| |||||||  |||||||    
T  30287481 cgcttagcccaacagtaattaactactacagaaagctatttaataaattacttgtgttattgtgaagttctcaatatcagaaaagcaatttt 30287390  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 33841088 - 33841142
Alignment:
Q  151 tttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    |||| |||||||||||||  |||||||||||||||||||||||||  ||||||||    
T  33841088 tttagtaaattacttatgttattgtgaagttctcaatgtcagaaaagcaattttc 33841142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 44809871 - 44809830
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaatta 162  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  44809871 ccaacggtagttaactaccgctgaagactttttaataaatta 44809830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 42993463 - 42993546
Alignment:
Q  122 caacggtagttaactaccgctgaaggctctttaa-taaattacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    ||||||||||||| ||| |||||||| | ||||| ||  |||||| || |||||||||||| ||||| ||||||| |||||||||    
T  42993463 caacggtagttaaatactgctgaagg-tatttaagtattttacttgtgtcattgtgaagttttcaatatcagaaaaacaattttc 42993546  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 11701314 - 11701217
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaacaacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  11701314 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaacccattcttgttcctaaacaagagcaacaacagcaacaa 11701217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 36858797 - 36858700
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaacaacaa 108  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  36858797 gggttcaggttttgttgatattgattcaatttatttgtatttgtttgatgtggttgaaacccattcttgttcctaaaaaagagcaacaacaacaacaa 36858700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 36858582 - 36858497
Alignment:
Q  104 aacaaccgtcgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgt 189  Q
    |||| ||| ||||||||||||||||||||||||||||||||  ||| |||||||||||| || ||   |||||| |||||||||||    
T  36858582 aacagccgccgcttagcccaacggtagttaactaccgctgagagctatttaataaattatttgtgttgttgtgatgttctcaatgt 36858497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 10221061 - 10220997
Alignment:
Q  123 aacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaat 187  Q
    |||||||||||||||||||||  |||| |||| |||||||||| || |||||||||||| |||||    
T  10221061 aacggtagttaactaccgctgggggctatttagtaaattacttgtgtcattgtgaagttttcaat 10220997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 11701143 - 11701088
Alignment:
Q  123 aacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaa 178  Q
    ||||||||||||||||||||| ||||| |||| |||||||||| || |||||||||    
T  11701143 aacggtagttaactaccgctggaggctatttagtaaattacttgtgtcattgtgaa 11701088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 11701771 - 11701845
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaat 187  Q
    |||||||||||||||||||||||||| | || ||||| |||| ||||||| || ||  ||||| |||||||||||    
T  11701771 cgcttagcccaacggtagttaactactgttggaggctatttagtaaattatttgtgttattgtaaagttctcaat 11701845  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 4424721 - 4424805
Alignment:
Q  17 aggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaa 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  4424721 aggttttgttgacattgattcaatttatttgtattcgttttatgtgattgaaaccca-tcttgttcctaaaaaagagcaacaacaa 4424805  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 37203151 - 37203097
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgatt 65  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37203151 gggtttaggttttgttgacattgattcaatttatttgtatttgttttatgtgatt 37203097  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 37203083 - 37203025
Alignment:
Q  50 tttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaacaacaa 108  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37203083 tttgtttcatgtgattgaaatccattcttgttcctaaaaaagagcaacaacaacaacaa 37203025  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 37202913 - 37202813
Alignment:
Q  104 aacaaccgtcgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattt 203  Q
    |||| ||| |||||||||||||||||||||||||||||||  || | |||| ||||||||||    ||||||||||||||||||||||||||  ||||||    
T  37202913 aacagccgccgcttagcccaacggtagttaactaccgctg-gggttatttagtaaattacttgcatcattgtgaagttctcaatgtcagaaaagcaattt 37202815  T
Q  204 tc 205  Q
    ||    
T  37202814 tc 37202813  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 18665583 - 18665493
Alignment:
Q  11 gggttcaggttttgttgacattgattcaatttatttgtatttgttttatgtgattgaaactcattcttgttcctaaaaaagagcaacaacaacaacaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18665583 gggttcaggttttgttgacattgattcaatttatttgtatttgt-------gattgaaactcattcttattcctaaaaaagagcaacaacaacaacaa 18665493  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 18665403 - 18665312
Alignment:
Q  113 cgcttagcccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaatttt 204  Q
    |||||||||||||| |||||||||||| |||  |||| |||| |||||||||| || ||||||||||||||||||||||||||  |||||||    
T  18665403 cgcttagcccaacgatagttaactaccactgggggctatttagtaaattacttgtgtcattgtgaagttctcaatgtcagaaaagcaatttt 18665312  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 1296028 - 1295984
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    |||||||||||||||||||||||| || | |||| ||||||||||    
T  1296028 ccaacggtagttaactaccgctgagggttttttagtaaattactt 1295984  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 32132889 - 32132804
Alignment:
Q  120 cccaacggtagttaactaccgctgaaggctctttaataaattacttatgacattgtgaagttctcaatgtcagaaagacaattttc 205  Q
    ||||||||||||||||||||||||| |||| ||   ||| || |||||| |||||||||||| | ||||| ||||| |||||||||    
T  32132889 cccaacggtagttaactaccgctgatggcttttgggtaattttcttatgtcattgtgaagttatgaatgttagaaaaacaattttc 32132804  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 26747778 - 26747734
Alignment:
Q  121 ccaacggtagttaactaccgctgaaggctctttaataaattactt 165  Q
    |||||||| |||||||||||||| ||||| |||| ||||||||||    
T  26747778 ccaacggttgttaactaccgctggaggctttttagtaaattactt 26747734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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