View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_66 (Length: 316)
Name: NF1614_high_66
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 36289583 - 36289892
Alignment:
| Q |
7 |
gagtcaagagtaagcacacaagtgaattgaacactacatcttaaccataaacctaaaacattag---------ttatttcatttatatgttgttcaacat |
97 |
Q |
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| T |
36289583 |
gagtcaagagtaaccacacaagtgagttgaacactacatcttaaccataaacctaaaacattaggtttatgagttatttcatttatatgttgttcaacat |
36289682 |
T |
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| Q |
98 |
tcacttttctatttatcgtgagacttctaactcacacttgacacacaaaaaatctccccttcaagcgtgtgtt----cttccattcatctagatatgttc |
193 |
Q |
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| T |
36289683 |
tcacttttctatttatagttggacttctaactcacacttgacacacaaaaattctccccttcaagtgtgtgtttgttcttccattcatctagatatgttc |
36289782 |
T |
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| Q |
194 |
cccatcaagaaagtgttttttatccactcacttgcatgttgttgctccatcaactggacacgctgtttcaccaccattgttggaatgacttttgatgtaa |
293 |
Q |
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| T |
36289783 |
cccatcaagaaagtgttttttatccactcatttgcatgttgttgctccatcaactggacacgccatttcaccaccattgttggaatgacttttgatgtaa |
36289882 |
T |
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| Q |
294 |
ggagttggtg |
303 |
Q |
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|||||||||| |
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| T |
36289883 |
ggagttggtg |
36289892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 43434010 - 43434050
Alignment:
| Q |
96 |
attcacttttctatttatcgtgagacttctaactcacactt |
136 |
Q |
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| T |
43434010 |
attcacttttctatctaacgtgagacttctaaatcacactt |
43434050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 40260815 - 40260879
Alignment:
| Q |
80 |
ttatatgttgttcaacattcacttttctatttatcgtgagacttctaactcacacttgacacaca |
144 |
Q |
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| T |
40260815 |
ttatatgttgctcaacattcacttttccatctaatgtgggacttcaaactcacacttgagacaca |
40260879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 46408586 - 46408555
Alignment:
| Q |
115 |
gtgagacttctaactcacacttgacacacaaa |
146 |
Q |
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| T |
46408586 |
gtgagacttctaactcacacttgacacacaaa |
46408555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 33942736 - 33942764
Alignment:
| Q |
117 |
gagacttctaactcacacttgacacacaa |
145 |
Q |
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| T |
33942736 |
gagacttctaactcacacttgacacacaa |
33942764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 35951655 - 35951715
Alignment:
| Q |
76 |
tcatttatatgttgttcaacattcacttttctatttatcgtgagacttctaactcacactt |
136 |
Q |
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| T |
35951655 |
tcatttatatgttattcaatatatactcatctatttaatgtgagacttctaactcacactt |
35951715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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