View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_70 (Length: 310)
Name: NF1614_high_70
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 52877813 - 52877533
Alignment:
| Q |
13 |
aatatcattaagaatttgaattgaattttattttattcaaatctatttgtgtaagttttcaatcaagtttacatattttctgcataagatgttgactaaa |
112 |
Q |
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| T |
52877813 |
aatatcattaagaatttgaattgaattttattttattcaaatctatttgtgtaagttttcaatcaagtttacatattttctgcataagatgttgactaaa |
52877714 |
T |
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| Q |
113 |
taaggaatgcaatacctacgagtaaaggagacaagcaaaccaggaaatagaatatctccaaatccaatcatgtcataaccaccccaaggatcagaaggac |
212 |
Q |
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| T |
52877713 |
taaggaatgcaatacctacgagtaaaggagacaagcaaaccaggaaatagaatatctccaaatccaatcatgtcatagccaccccaaggatcagaaggac |
52877614 |
T |
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| Q |
213 |
gtggaaatctcaaaagcatgggaattgcttcaccacctgctttgtcaccacgagcaacctagataacaaaacgttaaacta |
293 |
Q |
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| T |
52877613 |
gtggaaatctcaaaagcatgggaattgcttcaccacctgctttgtcaccacgagcaacctagataacaaaacgttaaacta |
52877533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 254160 - 254322
Alignment:
| Q |
110 |
aaataaggaatgcaatacctacgagtaaaggagacaagcaaaccaggaaatagaatatctccaaatccaatcatgtcataaccaccccaaggatcagaag |
209 |
Q |
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||||||||||| || |||||| ||| |||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| | |||| || |
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| T |
254160 |
aaataaggaattcagtacctatgagcaaaggaaacaagcaaaccaggaaagatgatatctccaaagccaatcatgtcataaccaccccatgtatcaaaaa |
254259 |
T |
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| Q |
210 |
gacgtggaaatctcaaaagcatgggaattgcttcaccacctgctttgtcaccacgagcaacct |
272 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||| |
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| T |
254260 |
gacgaggaaatctcaaaagcataggaattgcttcaccaccagccttgtcacctcgagcaacct |
254322 |
T |
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