View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_75 (Length: 294)
Name: NF1614_high_75
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_75 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 36946048 - 36946173
Alignment:
| Q |
155 |
atcgttgaaattgatgagtataatattgctctagccatataatataaatttgaacatgtacatttctattttttgctggaccaggaattttcctagtatt |
254 |
Q |
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| T |
36946048 |
atcgttgaaattgatgagtataatattgctctagccatataatataaatttgaacatgtacatttctattttttgctggaccaggaattttcctagtatt |
36946147 |
T |
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| Q |
255 |
tatatggaacttaaacttgatattga |
280 |
Q |
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| T |
36946148 |
tatatggaacttaaacttgatattga |
36946173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36945892 - 36946011
Alignment:
| Q |
1 |
tgacaaatgtacaaatgatgacactaatatgaattttgggaaactttgttggtaaacaatcaaattataaatgnnnnnnntagttgatcacaatatttga |
100 |
Q |
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| T |
36945892 |
tgacaaatgtacaaatgatgacactaatatgaattttgggaaactttgttggtaaacaatcaaattataaatgaaaaaaatagttgatcacaatatttga |
36945991 |
T |
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| Q |
101 |
gggtcaaaatggattgaaga |
120 |
Q |
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| T |
36945992 |
gggtcaaaatggattgaaga |
36946011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 36963219 - 36963300
Alignment:
| Q |
159 |
ttgaaattgatgagtataatattgctctagccatataatataaatttgaacatgtacatttctattttttgctggaccagga |
240 |
Q |
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| T |
36963219 |
ttgaagttgattagcatattattgctctatttatacaatataaatttgaacatgcacatttcgaatttttgctggaccagga |
36963300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 36963135 - 36963180
Alignment:
| Q |
25 |
taatatgaattttgggaaactttgttggtaaacaatcaaattataa |
70 |
Q |
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| T |
36963135 |
taatatgaattttggggaactttgtagatagacaatcaaattataa |
36963180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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