View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_77 (Length: 287)

Name: NF1614_high_77
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_77
NF1614_high_77
[»] chr3 (1 HSPs)
chr3 (4-271)||(43143573-43143838)
[»] chr1 (7 HSPs)
chr1 (17-87)||(49020335-49020405)
chr1 (27-87)||(11597718-11597778)
chr1 (18-78)||(30570596-30570656)
chr1 (27-87)||(740883-740943)
chr1 (18-78)||(6693229-6693289)
chr1 (27-87)||(14983854-14983914)
chr1 (18-87)||(51571276-51571347)
[»] chr5 (3 HSPs)
chr5 (18-127)||(19844199-19844309)
chr5 (18-87)||(21353216-21353285)
chr5 (17-87)||(33958189-33958261)
[»] chr2 (2 HSPs)
chr2 (17-87)||(31296607-31296679)
chr2 (17-87)||(21738547-21738617)
[»] chr7 (3 HSPs)
chr7 (18-84)||(42552970-42553036)
chr7 (18-84)||(25887933-25887999)
chr7 (18-75)||(36207108-36207165)
[»] chr4 (4 HSPs)
chr4 (17-86)||(19748706-19748775)
chr4 (17-86)||(19791031-19791100)
chr4 (27-87)||(19165362-19165422)
chr4 (18-86)||(6520764-6520832)
[»] chr8 (2 HSPs)
chr8 (18-78)||(27854707-27854767)
chr8 (27-87)||(5740715-5740775)
[»] chr6 (3 HSPs)
chr6 (27-87)||(34047468-34047528)
chr6 (19-86)||(5522570-5522637)
chr6 (54-86)||(2159236-2159268)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 43143573 - 43143838
Alignment:
Q  4 atatttacatcggatttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtcnnnnnnntt-tcaatc 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||       || ||||||    
T  43143573 atatttacatcggatttttactttctctcaattgttttgatttttatactaatatctatttttctttgtaaaattatggttgtctaaaaaattatcaatc 43143672  T
Q  103 aaataattgttgaaataacacaacttatatttatacatatcatgttatgattcttctttgcctcatttttatcnnnnnnnnnnnggctacatgcctcgta 202  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||            |||||||||||||||    
T  43143673 aaatgattgttgaaataacacaacttatatttatatatatcatgttatgtttcttctttgcctcatgtttatcttttttttt---gctacatgcctcgta 43143769  T
Q  203 tttatcttgaatgggccagaggaacatctctttttccttttcatttattattcttcaggtaattcttat 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  43143770 tttatcttgaatgggccagaggaacatctttttttccttttcatttattattcttcaggtatttcttat 43143838  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 49020405 - 49020335
Alignment:
Q  17 atttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| ||||||||| |||||||||||||||  || ||||| ||||||||||||||||| ||||||||||    
T  49020405 attttttctttctctctattgttttggtttttgtgccaatatatatttttctttgtaaaaatatggttgtc 49020335  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 11597718 - 11597778
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| ||||||||||||||   ||||||||||| |||||||||||||  ||||||||||    
T  11597718 tctctctattgttttggttttcgtgctaatatctacttttctttgtaaatctatggttgtc 11597778  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30570596 - 30570656
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaatt 78  Q
    ||||||||||||||| ||||||||| |||||  ||||||||||   |||||||||||||||    
T  30570596 tttttactttctctctattgttttgatttttgtgctaatatctcgatttctttgtaaaatt 30570656  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 740943 - 740883
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| ||| |||||||||||  | |||||  || |||||||||||||||||||||||||    
T  740943 tctctctattattttggtttttgtgttaatacataattttctttgtaaaattatggttgtc 740883  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6693229 - 6693289
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaatt 78  Q
    ||||||||||||||| |||||||||||||||| |  |||| ||  ||| ||||||||||||    
T  6693229 tttttactttctctctattgttttggtttttatgtcaatacctcatttcctttgtaaaatt 6693289  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 14983854 - 14983914
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| |||||||| ||||||  |  ||||||| ||||||||||| ||||||||||||||    
T  14983854 tctctctattgttttagtttttgtgtcaatatctctttttctttgtgaaattatggttgtc 14983914  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 51571347 - 51571276
Alignment:
Q  18 tttttactttctct--caattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    ||||||||||||||  | |||| ||||||||||  |  |||| || ||||||||||||||||||||||||||    
T  51571347 tttttactttctctttctattgctttggtttttgtgtcaatacctctttttctttgtaaaattatggttgtc 51571276  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 19844309 - 19844199
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtcnnnnnnntt-tcaatcaaataattgttgaa 116  Q
    ||||||||||||||| |||| |||||||| |  || |||| || ||||||||||||||||||||||||||       || ||||||||||| ||||| ||    
T  19844309 tttttactttctctctattgctttggtttgtgtgccaatacctctttttctttgtaaaattatggttgtcttaaaaattatcaatcaaatatttgttcaa 19844210  T
Q  117 ataacacaact 127  Q
    |||||||||||    
T  19844209 ataacacaact 19844199  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 21353216 - 21353285
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    ||||||||||||||| |||  ||| ||||||  | |||||  | ||||||||||||||||||||||||||    
T  21353216 tttttactttctctctattactttagtttttgtgttaatacatctttttctttgtaaaattatggttgtc 21353285  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 33958261 - 33958189
Alignment:
Q  17 atttttactttctctca--attgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    ||||||||||||||||   |||| ||||||||||  |  ||||||| |||||||||||||| |||||||||||    
T  33958261 atttttactttctctctctattgctttggtttttgtgtcaatatctctttttctttgtaaatttatggttgtc 33958189  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 31296607 - 31296679
Alignment:
Q  17 atttttactttct--ctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||||||||||  ||| |||||||||||||  | | ||||||||||||||||||||||| |||||||||||    
T  31296607 atttttactttctgtctctattgttttggtttccatgttaatatctatttttctttgtaaatttatggttgtc 31296679  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 21738617 - 21738547
Alignment:
Q  17 atttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    ||||||||||||| ||||||| ||||||||||  || || |  ||||||||||||||||| |||| |||||    
T  21738617 atttttactttctttcaattgctttggtttttgtgccaacacatatttttctttgtaaaaatatgattgtc 21738547  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 42552970 - 42553036
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggtt 84  Q
    |||||||| ||||||  ||||||||||||||  || |||| || |||||||||||||||||||||||    
T  42552970 tttttactctctctctgttgttttggtttttgtgccaatacctctttttctttgtaaaattatggtt 42553036  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 25887933 - 25887999
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggtt 84  Q
    |||||| ||||| || ||||||||||||| || |  ||||||||||||||||| |||| ||||||||    
T  25887933 tttttattttctatctattgttttggtttctatgtcaatatctatttttctttttaaatttatggtt 25887999  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 36207108 - 36207165
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaa 75  Q
    |||||| |||||||| |||||||||||||||  || |||||||  |||||||||||||    
T  36207108 tttttagtttctctctattgttttggtttttctgccaatatcttattttctttgtaaa 36207165  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 19748706 - 19748775
Alignment:
Q  17 atttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgt 86  Q
    ||||||||||||||||  |||||||||||||   | ||||| ||||||||||||||||| ||||| ||||    
T  19748706 atttttactttctctctgttgttttggttttcgtgttaatacctatttttctttgtaaatttatgattgt 19748775  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 19791100 - 19791031
Alignment:
Q  17 atttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgt 86  Q
    ||||||||||||||||  |||||||||||||   | ||||| ||||||||||||||||| ||||| ||||    
T  19791100 atttttactttctctctgttgttttggttttcgtgttaatacctatttttctttgtaaatttatgattgt 19791031  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 19165422 - 19165362
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| |||||||||||||||  || ||||  ||||||||||||||||| ||||||||||    
T  19165422 tctctctattgttttggtttttgtgccaatacatatttttctttgtaaaaatatggttgtc 19165362  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 6520832 - 6520764
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgt 86  Q
    ||||||||||||||| |||||||||||||| | |  || | ||||||||||||| ||  ||||||||||    
T  6520832 tttttactttctctctattgttttggttttcatgtcaacacctatttttctttgaaattttatggttgt 6520764  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27854767 - 27854707
Alignment:
Q  18 tttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaatt 78  Q
    ||||||||||||||| ||||||||| |||||  || ||||| || ||||||||||||||||    
T  27854767 tttttactttctctctattgttttgatttttgtgccaatatttaattttctttgtaaaatt 27854707  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 5740775 - 5740715
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| |||||||||||||||  |   ||| || ||||||||||||||||||||||||||    
T  5740775 tctctctattgttttggtttttgtgtcgatacctctttttctttgtaaaattatggttgtc 5740715  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 34047468 - 34047528
Alignment:
Q  27 tctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgtc 87  Q
    |||||| |||| ||||||||||  || ||||||| ||||||||||||||||| ||||||||    
T  34047468 tctctctattgctttggtttttgtgccaatatctctttttctttgtaaaattttggttgtc 34047528  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 5522637 - 5522570
Alignment:
Q  19 ttttactttctctcaattgttttggtttttacgctaatatctatttttctttgtaaaattatggttgt 86  Q
    |||||||||||||| |||| ||||||||||  ||||||| ||| ||| |||| |||| ||||||||||    
T  5522637 ttttactttctctctattgctttggtttttgtgctaatacctactttcctttataaatttatggttgt 5522570  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 2159268 - 2159236
Alignment:
Q  54 aatatctatttttctttgtaaaattatggttgt 86  Q
    |||||||||||||||||||||| ||||||||||    
T  2159268 aatatctatttttctttgtaaatttatggttgt 2159236  T

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