View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_78 (Length: 283)
Name: NF1614_high_78
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_78 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 33950784 - 33950530
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
118 |
Q |
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| T |
33950784 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
33950685 |
T |
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| Q |
119 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33950684 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatg |
33950585 |
T |
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| Q |
219 |
tgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
273 |
Q |
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| T |
33950584 |
tgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
33950530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 33973448 - 33973227
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
118 |
Q |
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|||||| ||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33973448 |
ctatcaaactatttatttcttctctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaa |
33973349 |
T |
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| Q |
119 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatg |
218 |
Q |
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| T |
33973348 |
caatagccttgaactttggttctttcgtgctgtttcaactatttcagatattttgttcaagacatca------ttaaatcttgttgtaagggtaataata |
33973255 |
T |
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| Q |
219 |
tgt---gtagcgctactcatgaatttga |
243 |
Q |
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||| || ||||||||||||||||||| |
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| T |
33973254 |
tgtgtcgtggcgctactcatgaatttga |
33973227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 33990246 - 33990013
Alignment:
| Q |
33 |
atttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaac |
132 |
Q |
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| T |
33990246 |
atttcttctctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcac |
33990147 |
T |
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| Q |
133 |
tttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgct |
229 |
Q |
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| T |
33990146 |
tttggtgctttcgtgctgtttcaactatttgagatattttgttcaagacatcatg------aaatcttgttgtaagggtaataatatgtgtagtggcgct |
33990053 |
T |
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| Q |
230 |
actcatgaatttgagattccttcttctgtttttgcctgtc |
269 |
Q |
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| T |
33990052 |
actcatgaatttgagattccttcctctgcttttgcctgtc |
33990013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
140 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
239 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
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| Q |
240 |
ttg |
242 |
Q |
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||| |
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| T |
33959249 |
ttg |
33959247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 33959431 - 33959346
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatccttt |
104 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||| |
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| T |
33959431 |
ctattagactatttatttcctctctggggtgatccaaatgatcattgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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