View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_81 (Length: 280)
Name: NF1614_high_81
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2215802 - 2216081
Alignment:
| Q |
1 |
ttcctctcgcacatacctttgatagggtcattgaggagacatttatatggcatggtggttcaatagacttctggcgcggggttagtatatgtactaaact |
100 |
Q |
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| T |
2215802 |
ttcctctcgcacatacctttgatagggtcattgaggagacatttatatggcatggtggttcaataggcttctggtgcggggttagtatatgtactaaact |
2215901 |
T |
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| Q |
101 |
tgtcgttaattcatagtgataataattgaacttcagatttaattttatcaccccaacaagacaaaaaatggaa-atttttggatttgaatatgtccttgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2215902 |
tgtcgttaattcatagtgataataattgaacttcagatttaattttatcaccccaagaagacaaaaaatgaaatttttttggatttgaatatgtccttgt |
2216001 |
T |
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| Q |
200 |
ccatcatttgtactatggctgcaggatgttaagttgttaattgaagatctctgggagctaaaaccaacttttttctgtgc |
279 |
Q |
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| T |
2216002 |
ccatcatttgtactatggctgcaggatgttaagttgttaattgaagatctcggggagctaaaaccaacttttttctgtgc |
2216081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2203185 - 2203471
Alignment:
| Q |
1 |
ttcctctcgcacatacctttgatagggtcattgaggagacatttatatggcatggtggttcaatagacttctggcgcggggttagtatatgtactaaact |
100 |
Q |
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||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
2203185 |
ttcctctcgcacacatctttgatagggtcattgaagagacatttatatggcatggtggttcaataggcttctggcgcggggtgagtatatgtaccaaact |
2203284 |
T |
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| Q |
101 |
tgtcgtta----------attcatagtgataataattgaacttcagatttaattttatcaccccaacaagacaaaaaatggaaatttt-tggatttgaat |
189 |
Q |
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| T |
2203285 |
ttttgttactgaattataattcatagtgataat---tgaactttaaatttaattttatcaccccaacaagtcaaaaattggaacttttttggatttgaat |
2203381 |
T |
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| Q |
190 |
atgtccttgtccatcatttgtactatggctgcaggatgttaagttgttaattgaagatctctgggagctaaaaccaacttttttctgtgc |
279 |
Q |
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||| |||||||||||||||| || |||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
2203382 |
atgaccttgtccatcatttgcacaatggctgcaggatgttaaactattaattgaagatctcggggagctaaaaccaactattttctgtgc |
2203471 |
T |
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