View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_84 (Length: 272)
Name: NF1614_high_84
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 22362262 - 22362019
Alignment:
| Q |
17 |
aatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatcttgctg---ggttcttattcatcttttctttttcatgcgttgtgtat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
22362262 |
aatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatattgctgctgggttcttattcatcttttctatttcatgcattgtgtat |
22362163 |
T |
|
| Q |
114 |
gttagggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362162 |
gttagggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccatagtattaagaggttatggaagaattcagatactatttccaaacgg |
22362063 |
T |
|
| Q |
214 |
aagcaatgcaatggaagcagaaatcaaagtaggagacatattct |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362062 |
aagcaatgcaatggaagcagaaatcaaagtaggagacatattct |
22362019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39814908 - 39815019
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| |||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39814908 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaac |
39815007 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39815008 |
caatgcaatgga |
39815019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39805623 - 39805734
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39805623 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39805722 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39805723 |
caatgcaatgga |
39805734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39825987 - 39826098
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39825987 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39826086 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39826087 |
caatgcaatgga |
39826098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39902548 - 39902659
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39902548 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39902647 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39902648 |
caatgcaatgga |
39902659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39911006 - 39911117
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39911006 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39911105 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39911106 |
caatgcaatgga |
39911117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39922149 - 39922260
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39922149 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39922248 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39922249 |
caatgcaatgga |
39922260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 39927845 - 39927956
Alignment:
| Q |
117 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
216 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
|
|
| T |
39927845 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39927944 |
T |
|
| Q |
217 |
caatgcaatgga |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39927945 |
caatgcaatgga |
39927956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University