View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_85 (Length: 270)
Name: NF1614_high_85
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_85 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3684524 - 3684292
Alignment:
| Q |
1 |
agaccggtctcaactacatggacagcaccacgggagaataatgaacccaacaatcgtggctactttgactatggctacatgtaccctaaaaaggtcgttg |
100 |
Q |
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| T |
3684524 |
agaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactatgactatgggtacatgtaccctaaaaaggtcgttg |
3684425 |
T |
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| Q |
101 |
ctgtcacgtgccatggnnnnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggtgtt |
200 |
Q |
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| T |
3684424 |
ctatcacgtgccatggaaaaaaaa-cttcattctcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggcgtt |
3684326 |
T |
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| Q |
201 |
ctctgtcatgtcagcgaaatgggaagatatgtgc |
234 |
Q |
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| T |
3684325 |
ctctgtcatgtcagcgaaatgggaagacatgtgc |
3684292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 3676292 - 3676119
Alignment:
| Q |
68 |
actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttact |
167 |
Q |
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| T |
3676292 |
actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact |
3676193 |
T |
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| Q |
168 |
tttgaaaaatgg-------tgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc |
234 |
Q |
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| T |
3676192 |
tttgaaaagtggtcatgactcatgagaattggaaggtgttctctgacatgtcagcaaaatgggaagatatgtgc |
3676119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
| Q |
76 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
9159140 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9159180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
| Q |
76 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
9171288 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9171248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
| Q |
76 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
7013306 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7013266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
| Q |
76 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
7026242 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7026202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
| Q |
75 |
ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
7047293 |
ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg |
7047252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
| Q |
84 |
ccctaaaaaggtcgttgctgtcacgtgccatgg |
116 |
Q |
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| T |
7041950 |
ccctataaaggtcgttgctgtcacgtgccatgg |
7041918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 9159225 - 9159277
Alignment:
| Q |
161 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
213 |
Q |
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| T |
9159225 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9159277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 9171203 - 9171151
Alignment:
| Q |
161 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
213 |
Q |
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| T |
9171203 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9171151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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