View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_88 (Length: 260)
Name: NF1614_high_88
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_88 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 5995004 - 5994937
Alignment:
| Q |
180 |
tgagggtattgattgccatatcaaaaagcttaggaatttgttggtcaagagaacttctggttttgatg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5995004 |
tgagggtattgattgccatatcaaaaagctaaggaatttgttggttaagagaacttctggttttgatg |
5994937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5995183 - 5995128
Alignment:
| Q |
1 |
acgaagaggaggaatgtaagtgagagcttgaagttgcgaggattgaaaatggggtg |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5995183 |
acgaagaggaggaatgtaagtgagagcttgaagttgagaggattgaaaatggggtg |
5995128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 1665444 - 1665482
Alignment:
| Q |
183 |
gggtattgattgccatatcaaaaagcttaggaatttgtt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1665444 |
gggtattgattgccatatcaaaaagcttacgaatttgtt |
1665482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 1887100 - 1887064
Alignment:
| Q |
180 |
tgagggtattgattgccatatcaaaaagcttaggaat |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1887100 |
tgagggtattaattgccatatcaaaaagcttaggaat |
1887064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 1671535 - 1671571
Alignment:
| Q |
180 |
tgagggtattgattgccatatcaaaaagcttaggaat |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
1671535 |
tgagggtattaattgccatatcaaaaaggttaggaat |
1671571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University