View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_89 (Length: 260)
Name: NF1614_high_89
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 47377886 - 47378131
Alignment:
| Q |
1 |
aaaccgcacacgagtcaaccggttccggttcgctttttccaatttccggcatttcaactagtgatttatctagaaaattctcaatctcttgcggccatgg |
100 |
Q |
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| T |
47377886 |
aaaccgcacacgagtcaaccggttccggttcgctttttccaatttccggcatttcaactagtgatttatctagaaaattctcaatctcttgcggccatgg |
47377985 |
T |
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| Q |
101 |
tttgttatcgtttgcaggacacggagacttgaacggcgtgttcagccacgtcttcacgatctcgattgcggtttccggtgacgtatacttgccggagaca |
200 |
Q |
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| T |
47377986 |
tttgttatcgtttgcaggacacggagacttgaacggcgtgttcagccacgtcttcacgatctcgattgcggtttccggtgacgtatacttgccggagaca |
47378085 |
T |
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| Q |
201 |
gcgaggacgtttgagttgttgattgatcgggcgttgacggcgtcag |
246 |
Q |
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| T |
47378086 |
gcgaggacgtttgagttgttgattgatcgggcgttgacggcgtcag |
47378131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 47372192 - 47372370
Alignment:
| Q |
60 |
agtgatttatctagaaaattctcaatctcttgcggccatggtttgttatcgtttgcaggacacggagacttgaacggcgtgttcagccacgtcttcacga |
159 |
Q |
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| T |
47372192 |
agtgatctatctagaaggttctcaacctcctgtggccatggtttgttgtcgcttgcaagacaaggagacttgaacggcgtgttcagccatgcattgacaa |
47372291 |
T |
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| Q |
160 |
tctcgattgcggtttccggtgacgtatacttgccggagacagcgaggacgtttgagttgttgattgatcgggcgttgac |
238 |
Q |
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| T |
47372292 |
tctcaattcctatttcgggtgaagtgaacttgcctgaaagggcaaggacgtttgaattgttgattgatcgggtgttgac |
47372370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 40933678 - 40933889
Alignment:
| Q |
35 |
ttttccaatttccggcatttcaactagtgatttatctagaaaattctcaatctcttgcggccatggtttgttatcgtttgcaggacacggagacttgaac |
134 |
Q |
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| T |
40933678 |
ttttccgatttccgccatttcaaccagagacttgtctagaaacctctccatctcttctggccacggtttgttattgcttgcaggacaaggagagttaaac |
40933777 |
T |
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| Q |
135 |
ggcgtgttcagccacgtcttcacgatctcgattgcggtttccggtgacgtatacttgccggagacagcgaggacgtttgagttgttgattgatcgggcgt |
234 |
Q |
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| T |
40933778 |
ggagtgttcaaccacgcatctacgatctcgaccgctgtttcggctgaagtgtacttaccagatacggcgaggacatttgaattattgatggatcgggcgt |
40933877 |
T |
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| Q |
235 |
tgacggcgtcag |
246 |
Q |
| |
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|||| ||||||| |
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| T |
40933878 |
tgacagcgtcag |
40933889 |
T |
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