View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_91 (Length: 251)
Name: NF1614_high_91
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_91 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 15419425 - 15419601
Alignment:
| Q |
58 |
cgcaaattcaatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcatt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15419425 |
cgcaaattcaatctacagaaagaaagaataatgagaaatcttggaatactatgatagataaaccaaggaataatgagtccaatgctaatgagggttcatt |
15419524 |
T |
|
| Q |
157 |
aagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcatatgctagctataa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15419525 |
aagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcatatgccagctataa |
15419601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 17682708 - 17682540
Alignment:
| Q |
67 |
aatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcattaagaacctg |
165 |
Q |
| |
|
|||| |||| |||||| ||| |||||||||||||||| |||| |||||||||| | |||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
17682708 |
aatccacaggaagaaaaaatcatgagaaatcttggaaaactacgatagataaaccacggaataatgagtccaatgttaa---gggttcattcagaacctg |
17682612 |
T |
|
| Q |
166 |
ttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctata |
232 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
17682611 |
ttacatcaatttattccgcctttgtctagggtctgaaaatccactggaacaacaattcatatgccagctata |
17682540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 15432633 - 15432694
Alignment:
| Q |
145 |
tgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc |
206 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15432633 |
tgagggttcattcagaacctgttacatcaattaattccgcctttgtcaagggtcagaaaatc |
15432694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 15080787 - 15080708
Alignment:
| Q |
159 |
gaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataa |
233 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
15080787 |
gaacctgttacaacaattcattccgtctttgacaagggtcagaaaatccactggaacaacaattcatatgccagctataa |
15080708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 14662530 - 14662651
Alignment:
| Q |
63 |
attcaatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcattaagaa |
161 |
Q |
| |
|
|||||||| |||| || ||| ||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||| || |||| |
|
|
| T |
14662530 |
attcaatcaacaggaataaaaaatcatgagaaatcttggaatactgtgatagataaacaaaggaataatttgtccaatgcta---agggttttttcagaa |
14662626 |
T |
|
| Q |
162 |
cctgttacaacaattaattccgcct |
186 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
14662627 |
tcttttacatcaattaattccgcct |
14662651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University