View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_10 (Length: 627)

Name: NF1614_low_10
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_10
NF1614_low_10
[»] chr5 (10 HSPs)
chr5 (38-335)||(36854279-36854577)
chr5 (378-609)||(36854620-36854849)
chr5 (40-164)||(31476921-31477044)
chr5 (39-164)||(31850616-31850739)
chr5 (90-164)||(3933983-3934058)
chr5 (64-165)||(20259327-20259430)
chr5 (39-165)||(21639012-21639137)
chr5 (93-165)||(37334595-37334668)
chr5 (64-166)||(5345109-5345213)
chr5 (64-164)||(20540295-20540397)
[»] chr6 (11 HSPs)
chr6 (40-137)||(26391417-26391513)
chr6 (528-610)||(6671874-6671956)
chr6 (394-478)||(6671972-6672056)
chr6 (93-166)||(32114415-32114489)
chr6 (93-165)||(10702942-10703015)
chr6 (93-165)||(12693839-12693912)
chr6 (64-165)||(34794500-34794603)
chr6 (93-166)||(4126495-4126567)
chr6 (40-114)||(32003820-32003892)
chr6 (93-172)||(12025503-12025583)
chr6 (64-109)||(31281663-31281710)
[»] chr4 (15 HSPs)
chr4 (93-166)||(16960198-16960272)
chr4 (93-165)||(26705677-26705750)
chr4 (93-167)||(17722742-17722817)
chr4 (64-165)||(33032154-33032257)
chr4 (93-163)||(35667389-35667460)
chr4 (64-164)||(55069492-55069594)
chr4 (93-165)||(16192323-16192396)
chr4 (64-131)||(17729539-17729608)
chr4 (40-114)||(30192555-30192627)
chr4 (95-166)||(36687244-36687317)
chr4 (91-163)||(44664702-44664775)
chr4 (93-168)||(796374-796450)
chr4 (93-166)||(13771711-13771785)
chr4 (93-164)||(35665947-35666019)
chr4 (64-138)||(49702397-49702473)
[»] chr3 (17 HSPs)
chr3 (49-165)||(33115199-33115314)
chr3 (93-166)||(53490044-53490118)
chr3 (38-139)||(28248109-28248209)
chr3 (93-164)||(6293203-6293275)
chr3 (93-171)||(48223550-48223629)
chr3 (40-139)||(49764512-49764610)
chr3 (90-171)||(10688778-10688860)
chr3 (93-170)||(40927484-40927562)
chr3 (93-165)||(23681987-23682060)
chr3 (93-165)||(24054224-24054297)
chr3 (93-161)||(27396693-27396762)
chr3 (64-112)||(32373346-32373395)
chr3 (93-164)||(11581833-11581905)
chr3 (93-164)||(27255282-27255354)
chr3 (64-169)||(33979258-33979365)
chr3 (64-162)||(44950963-44951063)
chr3 (93-165)||(48842030-48842102)
[»] scaffold0102 (1 HSPs)
scaffold0102 (67-165)||(26983-27083)
[»] scaffold0115 (1 HSPs)
scaffold0115 (93-167)||(31361-31436)
[»] chr8 (11 HSPs)
chr8 (91-165)||(44746170-44746245)
chr8 (64-139)||(43764100-43764177)
chr8 (93-166)||(8628059-8628133)
chr8 (93-166)||(31846442-31846516)
chr8 (40-168)||(34364540-34364662)
chr8 (64-114)||(34679903-34679953)
chr8 (40-165)||(11759384-11759508)
chr8 (93-169)||(12336300-12336377)
chr8 (64-166)||(6099334-6099437)
chr8 (64-166)||(17565316-17565420)
chr8 (63-114)||(24778036-24778088)
[»] chr7 (14 HSPs)
chr7 (42-165)||(31220792-31220914)
chr7 (93-166)||(32867910-32867983)
chr7 (65-165)||(43450093-43450195)
chr7 (80-163)||(36848492-36848576)
chr7 (64-170)||(42813556-42813664)
chr7 (93-167)||(19156083-19156158)
chr7 (93-167)||(20755482-20755557)
chr7 (91-164)||(10412661-10412735)
chr7 (93-165)||(25954-26027)
chr7 (93-165)||(31221463-31221536)
chr7 (93-164)||(3341448-3341520)
chr7 (93-165)||(6184646-6184718)
chr7 (93-164)||(36687292-36687363)
chr7 (93-172)||(40401559-40401639)
[»] chr2 (15 HSPs)
chr2 (64-164)||(14743105-14743207)
chr2 (64-171)||(24758105-24758214)
chr2 (93-161)||(13873993-13874062)
chr2 (93-161)||(14014118-14014187)
chr2 (89-164)||(31709741-31709817)
chr2 (93-164)||(35954002-35954074)
chr2 (64-165)||(8726720-8726822)
chr2 (93-142)||(11470500-11470550)
chr2 (93-166)||(17449713-17449787)
chr2 (93-166)||(42791445-42791519)
chr2 (93-165)||(13873309-13873382)
chr2 (93-165)||(14013434-14013507)
chr2 (93-164)||(3045606-3045678)
chr2 (91-166)||(34173719-34173795)
chr2 (55-165)||(34248031-34248143)
[»] chr1 (13 HSPs)
chr1 (64-167)||(23739794-23739899)
chr1 (93-165)||(46682668-46682741)
chr1 (40-164)||(16536977-16537099)
chr1 (64-114)||(19997649-19997700)
chr1 (85-131)||(33475671-33475718)
chr1 (85-171)||(36512058-36512144)
chr1 (93-166)||(18406522-18406596)
chr1 (93-166)||(36604719-36604793)
chr1 (39-139)||(4666893-4666993)
chr1 (93-165)||(15356927-15357000)
chr1 (91-167)||(18407207-18407284)
chr1 (40-114)||(42830583-42830655)
chr1 (93-165)||(17109299-17109371)
[»] scaffold0340 (1 HSPs)
scaffold0340 (96-165)||(12184-12254)
[»] scaffold0368 (1 HSPs)
scaffold0368 (40-114)||(10639-10711)
[»] scaffold0361 (1 HSPs)
scaffold0361 (93-165)||(16479-16552)
[»] scaffold0004 (1 HSPs)
scaffold0004 (64-112)||(351914-351963)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 36854279 - 36854577
Alignment:
Q  38 gaggaggggaatgaaatattttttaataatatgttttgaataaaag-cgagaaaaatgtatattttaacataagagggagataagtttaattcaaccatc 136  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36854279 gaggaggggagtgagatattttctaataatatattttgaataaaaggcgaggaaaatgtatattttaacataagagggagataagtttaattcaaccatc 36854378  T
Q  137 tttcaagaaaagggagtgtaatttactcttaaaaattcatacatttgatacttcccattaatttagctctcacttttgataacgtaacgactaattgagc 236  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36854379 tttcaagaaaagggagtataatttactcttaaaaattcatacatttgatacttcccattaatttagctctcacttttgataacgtaacaactaattgagc 36854478  T
Q  237 aatgtggcattaacaatacgcttaagtgaaagtcatgcaataatttgactattttaaactaaacaatacaattcaaatacctttatttatttatttctg 335  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36854479 aatgtagcattaacaatacgcttaagtgaaagtcatgcaataatttgactattttaaactaaacaatacaattcaaatacctttttttatttatttctg 36854577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 378 - 609
Target Start/End: Original strand, 36854620 - 36854849
Alignment:
Q  378 gttgaacactcacataaacccaaatatgctaaacacacatctcaaacccctttccaaaaactatatttgtaagacgtcactcgaaacagttttcctcttt 477  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||     
T  36854620 gttgaacactcacataaacccaaatgtgctaaacacacatctcaaacccctttccaaaaactatatttgtaagatgtcactcgaaacatttttcctctt- 36854718  T
Q  478 agaacgccacttaaaacatttttccacttaatcctgaaattggattttgatcaccatctaaaatctgcatcaaagatgaatgaggcggtggagaagcggc 577  Q
     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36854719 -gaacgccactcaaaacatttttccacttaatcctgaaattggattttgatcaccatctaaaatctgcatcaaagatgaatgaggcggtggagaagtggc 36854817  T
Q  578 acgaggagattggcaattgagatgaggagaaa 609  Q
    ||||||||||||| ||||||||||||||||||    
T  36854818 acgaggagattgggaattgagatgaggagaaa 36854849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 31476921 - 31477044
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatct 137  Q
    |||||||| ||||||||||| |||||   |||||||||||| || | |  ||| ||||||||||||||||||| |||||   ||| |||||||| |||||    
T  31476921 ggaggggagtgaaatattttctaata---tgttttgaataagaggggatgaaagtgtatattttaacataagaggggaggggagtgtaattcaagcatct 31477017  T
Q  138 ttcaagaaaagggagtgtaatttactc 164  Q
    || | || | |||||||||||||||||    
T  31477018 ttgaggagaggggagtgtaatttactc 31477044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 31850616 - 31850739
Alignment:
Q  39 aggaggggaatgaaatattttttaataatatgttttgaataaaagcgagaaaaatgtatattttaacataagagggagata-agtttaattcaaccatct 137  Q
    ||||||||| ||||||||||| |||||   ||||||||| | | | |||  |||||||||||||||||||||||||  | | ||| |||||||| |||||    
T  31850616 aggaggggagtgaaatattttctaata---tgttttgaaaagaggggagtgaaatgtatattttaacataagaggggtagagagtgtaattcaagcatct 31850712  T
Q  138 ttcaagaaaagggagtgtaatttactc 164  Q
    || | |  | |||||||||||||||||    
T  31850713 ttgaggggaggggagtgtaatttactc 31850739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 3933983 - 3934058
Alignment:
Q  90 aaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    |||||||||||||||||||||| |||||  |||| |||||||| ||||||| | |  ||| |||||||||||||||    
T  3933983 aaatgtatattttaacataagaggggagggaagtgtaattcaagcatctttgaggggaagagagtgtaatttactc 3934058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 20259430 - 20259327
Alignment:
Q  64 taatatgttttgaataa-aagcgagaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| ||| |||| || |||||||||||||||||||| |||||  | | |||||||| ||||||| || |||   ||||| ||||||    
T  20259430 taatatgttttgaataagaagggagataagtgtatattttaacataagagaggagagtattgtaattcaagcatctttaaaaaaataagagtgcaattta 20259331  T
Q  162 ctct 165  Q
    ||||    
T  20259330 ctct 20259327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 21639137 - 21639012
Alignment:
Q  39 aggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatc 136  Q
    ||||||||| ||||||||||| |||||   |||||||||||| || | || | | ||||||||||||||||||| |||||   ||| |||||||| ||||    
T  21639137 aggaggggagtgaaatattttctaata---tgttttgaataagaggggaggagagtgtatattttaacataagaggggagtggagtgtaattcaagcatc 21639041  T
Q  137 tttcaagaaaagggagtgtaatttactct 165  Q
    ||| |||  | | ||||||||||||||||    
T  21639040 tttgaagggatgagagtgtaatttactct 21639012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 37334595 - 37334668
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||| ||||| |||||  |||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  37334595 tgtatattttaacttaagaagggagggaagtgtaattcaagcatctttgaagggaggggagtgtaatttactct 37334668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 5345109 - 5345213
Alignment:
Q  64 taatatgttttgaataaaagc-gagaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| ||  ||| ||| | ||||||||||||||||||  ||||  ||| ||||||||  |||||||||  || || |||||||||||    
T  5345109 taatatgttttgaataagaggagaggaaattatatattttaacataagagatgagaggagtgtaattcaaatatctttcaaacaagggaagtgtaattta 5345208  T
Q  162 ctctt 166  Q
    |||||    
T  5345209 ctctt 5345213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 20540397 - 20540295
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg--agataagtttaattcaaccatctttcaagaaaagggagtgtaattt 160  Q
    |||||||||||||||||||| | || | | ||||||||||||| ||| ||||  ||||| || ||||||||  |||||| ||| || |||||||||||||    
T  20540397 taatatgttttgaataaaaggggaggagagtgtatattttaacttaaaaggggaagata-gtgtaattcaaggatctttgaaggaaggggagtgtaattt 20540299  T
Q  161 actc 164  Q
    ||||    
T  20540298 actc 20540295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 26391513 - 26391417
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataa-aagcgagaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatct 137  Q
    |||||||| |||||||||||||||||   | |||||||||| ||| |||||||||||||||| ||||||||||| |||||| ||| |||||||| |||||    
T  26391513 ggaggggagtgaaatattttttaata---tattttgaataagaagggagaaaaatgtatattctaacataagagaggagatgagtgtaattcaagcatct 26391417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 6671956 - 6671874
Alignment:
Q  528 tcaccatctaaaatctgcatcaaagatgaatgaggcggtggagaagcggcacgaggagattggcaattgagatgaggagaaat 610  Q
    ||||||||| |||| |||| || |||||||||||| |||||||||| |||  | ||||||||| ||||||||| |||||||||    
T  6671956 tcaccatcttaaatttgcaccatagatgaatgaggtggtggagaagtggcgtggggagattgggaattgagataaggagaaat 6671874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 6672056 - 6671972
Alignment:
Q  394 aacccaaatatgctaaacacacatctcaaacccctttccaaaaactatatttgtaagacgtcactcgaaacagttttcctcttta 478  Q
    ||||||| ||||| |||||||   ||||||||||||||||||||||||||||||| | ||  |||| |||||  |||||||||||    
T  6672056 aacccaagtatgcaaaacacattcctcaaacccctttccaaaaactatatttgtagggcgctactcaaaacatatttcctcttta 6671972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 32114415 - 32114489
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||||| |||| |||| |||||||| ||||||| | | || | |||||||||||||||||    
T  32114415 tgtatattttaacataagaggagagagaagtgtaattcaagcatctttgagggaaggagagtgtaatttactctt 32114489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 10702942 - 10703015
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| |||||| |||| |||||||| ||||||| | | || | ||||||||||||||||    
T  10702942 tgtatattttaacataagaggggagagaagtgtaattcaagcatctttgagggaatgagagtgtaatttactct 10703015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 12693912 - 12693839
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||||| |||| |||| |||||||| ||||||| | |  | ||||||||||||||||||    
T  12693912 tgtatattttaacataagaggagagagaagtgtaattcaagcatctttgaggggaggggagtgtaatttactct 12693839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 34794500 - 34794603
Alignment:
Q  64 taatatgttttgaataaaa-gcgagaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    |||||||||||||| || | | ||| ||| ||||||||||||||||||| |||||   ||| |||||||| ||||||| ||| ||  |||||||||||||    
T  34794500 taatatgttttgaaaaagatgggaggaaagtgtatattttaacataagaggggaggggagtgtaattcaagcatctttaaaggaagaggagtgtaattta 34794599  T
Q  162 ctct 165  Q
    ||||    
T  34794600 ctct 34794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 4126495 - 4126567
Alignment:
Q  93 tgtatattttaacataagagggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||||| ||| ||| |||||||| ||||||| ||   | | |||||||||||||||||    
T  4126495 tgtatattttaacataagagggggat-agtgtaattcaaacatctttaaacggaggagagtgtaatttactctt 4126567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 32003820 - 32003892
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataa-aagcgagaaaaatgtatattttaacataagaggg 114  Q
    ||||||||||||||||||||    ||||||||||||||||| | | ||| | | ||||||||||||||||||||||    
T  32003820 ggaggggaatgaaatatttt---ctaatatgttttgaataagaggggaggagagtgtatattttaacataagaggg 32003892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 12025583 - 12025503
Alignment:
Q  93 tgtatattttaacataagaggga-gataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaaat 172  Q
    ||||||||||||| ||||||||| |   ||| |||||||| ||||||| | |  | |||||||||||||||||||||||||    
T  12025583 tgtatattttaacttaagagggaaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactcttaaaaat 12025503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 31281710 - 31281663
Alignment:
Q  64 taatatgttttgaataaaagcgaga--aaaatgtatattttaacataa 109  Q
    ||||||||||||||||| || ||||  |||||||||||||||||||||    
T  31281710 taatatgttttgaataagagggagagaaaaatgtatattttaacataa 31281663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 16960272 - 16960198
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||||| ||  |||| |||||||| ||||||| |||| | |||||||||||||||||||    
T  16960272 tgtatattttaacataagaggggagggaagtgtaattcaagcatctttgaagagaggggagtgtaatttactctt 16960198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 26705677 - 26705750
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    |||||||||||||||||||| ||||   ||| |||||||| ||||||| |||  ||||||||||||||||||||    
T  26705677 tgtatattttaacataagagaggaggggagtgtaattcaagcatctttgaagggaagggagtgtaatttactct 26705750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 17722817 - 17722742
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctta 167  Q
    |||||||||||||||||||||| ||   ||| |||||||| ||||||| |||  | ||||||||||||||||||||    
T  17722817 tgtatattttaacataagaggggaggggagtgtaattcaagcatctttaaagggaggggagtgtaatttactctta 17722742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 33032257 - 33032154
Alignment:
Q  64 taatatgttttgaataaaa-gcgagaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||||| | ||||  | ||||||||||||||||| | |||||| |||| |||||||| ||||||| | |  | || |||||||||||    
T  33032257 taatatgttttgaataaaaggggagaggagtgtatattttaacataataggggagagaagtgtaattcaagcatctttgaggggagggaagtgtaattta 33032158  T
Q  162 ctct 165  Q
    ||||    
T  33032157 ctct 33032154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 35667389 - 35667460
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttact 163  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||||||| | |  ||||||||||||||||||    
T  35667389 tgtatattttaacataagaggggagggaagtgtaattcaagcatctttgaggggaagggagtgtaatttact 35667460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 55069492 - 55069594
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| || | ||  || ||||||||||||||||||||| |||| || | |||||||| ||||||  | | || ||||||||||||||    
T  55069492 taatatgttttgaataagaggggagggaattgtatattttaacataagaggagagagaaatataattcaaacatcttagagggaaggggagtgtaattta 55069591  T
Q  162 ctc 164  Q
    |||    
T  55069592 ctc 55069594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 16192323 - 16192396
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    |||||||||||||||||||| ||||   ||| |||||||| |||||||||  | | ||||||||||||||||||    
T  16192323 tgtatattttaacataagagaggaggggagtgtaattcaagcatctttcagtagaggggagtgtaatttactct 16192396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 17729608 - 17729539
Alignment:
Q  64 taatatgttttgaataaaag-cgagaaaaatgtatattttaacataagagg-gagataagtttaattcaa 131  Q
    ||||||||||||||||| || ||||   ||||||||||||||||||||||| |||| |||| ||||||||    
T  17729608 taatatgttttgaataagaggcgaggggaatgtatattttaacataagaggagagagaagtgtaattcaa 17729539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 30192627 - 30192555
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg 114  Q
    |||||||||||||||||||| |||||   |||||||||||| || | ||  || ||||||||||||||||||||||    
T  30192627 ggaggggaatgaaatattttctaata---tgttttgaataagaggggagggaagtgtatattttaacataagaggg 30192555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 36687317 - 36687244
Alignment:
Q  95 tatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaag-ggagtgtaatttactctt 166  Q
    |||||||||||||||||| ||||| |||| |||||||| ||||||| | | |||  ||||||||||||||||||    
T  36687317 tatattttaacataagagaggagagaagtgtaattcaagcatctttgagggaaataggagtgtaatttactctt 36687244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 44664775 - 44664702
Alignment:
Q  91 aatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttact 163  Q
    ||||||||||||||||||||| |||||| |||| ||||||||  |||||| | |  | ||||||||||||||||    
T  44664775 aatgtatattttaacataagaggggagagaagtgtaattcaaatatctttgatgggaggggagtgtaatttact 44664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 796450 - 796374
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaa 168  Q
    ||||||||||||| |||||||| ||   ||| |||||||| ||||||| |||  | |||||||||||||||||||||    
T  796450 tgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaagggaggggagtgtaatttactcttaa 796374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 13771785 - 13771711
Alignment:
Q  93 tgtatattttaacataagagggagat--aagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||||| |||  |||| |||||||| ||||||| | |  | |||||||||||||||||||    
T  13771785 tgtatattttaacataagaggg-gatgaaagtgtaattcaagcatctttgaggggaggggagtgtaatttactctt 13771711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 35666019 - 35665947
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||| | |  | ||| |||||||||||||    
T  35666019 tgtatattttaacataagagaggagagaagtataattcaagcatctttgaggggaggggtgtgtaatttactc 35665947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 49702473 - 49702397
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctt 138  Q
    ||||||||||||||||| || | |||| | |||||||||||| |||||| |||||| |||| |||||||| ||||||    
T  49702473 taatatgttttgaataagaggggagaagattgtatattttaatataagaggggagagaagtgtaattcaagcatctt 49702397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 33115199 - 33115314
Alignment:
Q  49 tgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaa 146  Q
    ||||||||||||||| |   ||||||||||||||| | |||||| ||||||||||||||||||| |||||  |||| |||||||| |||||||  ||||     
T  33115199 tgaaatattttttaaaa---tgttttgaataaaagtggagaaaagtgtatattttaacataagaggggagggaagtgtaattcaagcatcttt-gagaag 33115294  T
Q  147 agg-gagtgtaatttactct 165  Q
    ||| ||||||||||||||||    
T  33115295 aggagagtgtaatttactct 33115314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 53490118 - 53490044
Alignment:
Q  93 tgtatattttaacataagagggagat-aagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||||||  || |||| |||||||| ||||||| |||  | |||||||||||||||||||    
T  53490118 tgtatattttaacataagaggggaatgaagtgtaattcaagcatctttgaagggaggggagtgtaatttactctt 53490044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 28248109 - 28248209
Alignment:
Q  38 gaggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataag-agggagataagtttaattcaaccat 135  Q
    |||||||||| |||||| ||||   ||||||||||||||| || || | ||||||||||||||||||||||||| | ||||  |||| |||||||| |||    
T  28248109 gaggaggggattgaaatgtttt---ataatatgttttgaacaagaggggagaaaaatgtatattttaacataagaaaggagtgaagtgtaattcaagcat 28248205  T
Q  136 cttt 139  Q
    ||||    
T  28248206 cttt 28248209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 6293275 - 6293203
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    |||||||||||||||||||||| ||  || | |||||||| ||||||| ||| || |||||||||||||||||    
T  6293275 tgtatattttaacataagaggggagggaaatgtaattcaaacatctttgaaggaaggggagtgtaatttactc 6293203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 48223629 - 48223550
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaaa 171  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||||| | | |  | ||||||||||||||||||||||||    
T  48223629 tgtatattttaacataagaagggaggaaagtgtaattcaagcatctcttaggcgaggggagtgtaatttactcttaaaaa 48223550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 49764610 - 49764512
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatct 137  Q
    |||||||| ||||||||||| |||||   |||||||||||| || | ||| || ||||||||||||||||||| |||||  |||| |||||||| |||||    
T  49764610 ggaggggagtgaaatattttctaata---tgttttgaataagaggggagagaagtgtatattttaacataagaggggagggaagtgtaattcaagcatct 49764514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 10688860 - 10688778
Alignment:
Q  90 aaatgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaaa 171  Q
    ||||||||||||||||||||||||| |||  | | ||| |||| ||||||| | |  | ||||||||||||||||||||||||    
T  10688860 aaatgtatattttaacataagaggggagaggaatgtaagtcaagcatctttgaggggaggggagtgtaatttactcttaaaaa 10688778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 40927562 - 40927484
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaa 170  Q
    |||||||||||||||||||||| ||  |||| |||||||| ||||||  | |  | |||||||||||||||||||||||    
T  40927562 tgtatattttaacataagaggggagggaagtgtaattcaagcatcttagaggggaggggagtgtaatttactcttaaaa 40927484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 23682060 - 23681987
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| ||||||  ||| ||| |||| ||||||| |||  | ||||||||||||||||||    
T  23682060 tgtatattttaacataagaggggagaggagtataactcaagcatctttgaagggaggggagtgtaatttactct 23681987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 24054297 - 24054224
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| ||||||  ||| ||| |||| ||||||| |||  | ||||||||||||||||||    
T  24054297 tgtatattttaacataagaggggagaggagtataactcaagcatctttgaagggaggggagtgtaatttactct 24054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 27396762 - 27396693
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||||| | | || | ||||||||||||    
T  27396762 tgtatattttaacataagaggggagatgagtgtaattcaagcatctttgagggaaggagagtgtaattta 27396693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 32373395 - 32373346
Alignment:
Q  64 taatatgttttgaataaaagc-gagaaaaatgtatattttaacataagag 112  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||||||||    
T  32373395 taatatgttttgaataagaggagaggaaaatgtatattttaacataagag 32373346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 11581905 - 11581833
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||| |||||| || | |||||||| ||||||| | || | || ||||||||||||||    
T  11581905 tgtatattttaacataagaggggagagaaatgtaattcaaacatctttaaggagagggaagtgtaatttactc 11581833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 27255354 - 27255282
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||| |||||   ||| |||||||| ||||||| |||  | |||||||||||||||||    
T  27255354 tgtatattttaacataagaggggaggagagtgtaattcaagcatctttgaagggaggggagtgtaatttactc 27255282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 33979258 - 33979365
Alignment:
Q  64 taatatgttttgaataaaa-gcgagaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagg-gagtgtaattt 160  Q
    ||||||||||||||||||| | |||  |||| ||||||||||||||| || ||||   ||| |||||||| ||||||| ||||| ||  |||||||||||    
T  33979258 taatatgttttgaataaaatgggagggaaatatatattttaacataaaagaggaggagagtataattcaaacatcttt-aagaagagatgagtgtaattt 33979356  T
Q  161 actcttaaa 169  Q
    |||||||||    
T  33979357 actcttaaa 33979365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 44950963 - 44951063
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    |||||| |||||||||| || | || ||| ||||||||||||||||||| ||||| | ||| || ||||| ||||||| | || | ||||||||||||||    
T  44950963 taatatattttgaataagaggggaggaaagtgtatattttaacataagaggggaggtgagtgtatttcaaacatctttgaggagaggggagtgtaattta 44951062  T
Q  162 c 162  Q
    |    
T  44951063 c 44951063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 48842030 - 48842102
Alignment:
Q  93 tgtatattttaacataagagggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||| ||||||   ||| |||||||| ||||||| | |  | ||||||||||||||||||    
T  48842030 tgtatattttaacataaaagggaggggagtgtaattcaatcatctttaaggggaggggagtgtaatttactct 48842102  T

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Target: scaffold0102 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 26983 - 27083
Alignment:
Q  67 tatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    |||||||||||||| || | ||| || ||||||||||||||||||| ||||||| ||| |||||||| ||||||| | |  | |||||||||||||||||    
T  26983 tatgttttgaataagaggggagagaagtgtatattttaacataagaggggagatgagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 27082  T
Q  165 t 165  Q
    |    
T  27083 t 27083  T

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Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 31361 - 31436
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctta 167  Q
    ||||||||||||||||| |||| ||  |||| |||||||| |||||||||||  | ||||||||||||||||||||    
T  31361 tgtatattttaacataaaaggggaggaaagtgtaattcaagcatctttcaagggaggggagtgtaatttactctta 31436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 44746245 - 44746170
Alignment:
Q  91 aatgtatattttaacataagagggaga-taagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||||||||| |  |||| |||||||| ||||| | ||  |||||||||||||||||||||    
T  44746245 aatgtatattttaacataagagggaaagaaagtgtaattcaaacatctctgaaagaaagggagtgtaatttactct 44746170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 43764177 - 43764100
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatcttt 139  Q
    |||||||||||||||||||| | || | | ||||||||||||||||||| |||||| |||| |||||||| |||||||    
T  43764177 taatatgttttgaataaaaggggaggagagtgtatattttaacataagaggggagagaagtgtaattcaaacatcttt 43764100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 8628059 - 8628133
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||| | ||| |||| |||||||| ||||||| |||  | | |||||||||||||||||    
T  8628059 tgtatattttaacataagagagaagaaaagtgtaattcaagcatctttgaagggaggagagtgtaatttactctt 8628133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 31846516 - 31846442
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||||||| | | || | |||||||||||||||||    
T  31846516 tgtatattttaacataagaggggagggaagtgtaattcaatcatcttttagggaaggagagtgtaatttactctt 31846442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 34364540 - 34364662
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataa-aagcgagaaaaatgtatattttaacataagagggagataagtttaattcaaccatctt 138  Q
    ||||||||||||||||||||    ||||||||||||||||| | | ||| | | ||||||||||||||||||||||     ||  |||||||| ||||||    
T  34364540 ggaggggaatgaaatatttt---ctaatatgttttgaataagaggggaggagagtgtatattttaacataagaggg----gagggtaattcaagcatctt 34364632  T
Q  139 tcaagaaaagggagtgtaatttactcttaa 168  Q
    | | |  | |||||||||||||||||||||    
T  34364633 tgaggggaggggagtgtaatttactcttaa 34364662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 34679903 - 34679953
Alignment:
Q  64 taatatgttttgaataaaagcgagaaaaatgtatattttaacataagaggg 114  Q
    ||||||||||||||||| || ||| ||| |||||||||||||||| |||||    
T  34679903 taatatgttttgaataagagggaggaaagtgtatattttaacatacgaggg 34679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 11759508 - 11759384
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg-agataagtttaattcaaccatct 137  Q
    |||||||| ||||||||||| |||||   |||||||||||| || | || ||| |||||||||||||||||| ||| ||   ||| |||||||| |||||    
T  11759508 ggaggggagtgaaatattttctaata---tgttttgaataagaggggaggaaagtgtatattttaacataagtggggaggggagtgtaattcaagcatct 11759412  T
Q  138 ttcaagaaaagggagtgtaatttactct 165  Q
    || | |  | ||||||||||||||||||    
T  11759411 ttgaggggaggggagtgtaatttactct 11759384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 12336300 - 12336377
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaa 169  Q
    ||||||||||||||||||||| |||  |||| | |||||||||| ||| | | || |||||||||||| |||||||||    
T  12336300 tgtatattttaacataagaggagagggaagtgttattcaaccatgtttgagggaaggggagtgtaattaactcttaaa 12336377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 6099437 - 6099334
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    |||| |||||||||||| || | || ||| ||||||||||||||||| ||| |||  |||| |||||||| ||||||| | |||| || |||||||||||    
T  6099437 taatttgttttgaataagaggggaggaaagtgtatattttaacataaaaggagagggaagtgtaattcaatcatctttgaggaaa-ggaagtgtaattta 6099339  T
Q  162 ctctt 166  Q
    |||||    
T  6099338 ctctt 6099334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 17565316 - 17565420
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| || | |||  | ||||||||||||||||||| ||||||  ||| ||||| || ||||||| | | || |||||| |||||||    
T  17565316 taatatgttttgaataagaggggagaggagtgtatattttaacataagaggggagaggagtgtaattgaagcatctttgagggaaggggagtataattta 17565415  T
Q  162 ctctt 166  Q
    |||||    
T  17565416 ctctt 17565420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 24778088 - 24778036
Alignment:
Q  63 ataatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg 114  Q
    |||||||||||||||||| || | ||| || ||||||||||||||||||||||    
T  24778088 ataatatgttttgaataagagggtagagaagtgtatattttaacataagaggg 24778036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 31220914 - 31220792
Alignment:
Q  42 aggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatcttt 139  Q
    |||||| |||||||||||||||||   |||||||||||| || | ||  || |||||||||||| |||||| ||||||  ||| |||||||| |||||||    
T  31220914 aggggagtgaaatattttttaata---tgttttgaataagagaggagggaattgtatattttaatataagaagggagaagagtgtaattcaagcatcttt 31220818  T
Q  140 caagaaaagggagtgtaatttactct 165  Q
     |||  | ||||||||||||||||||    
T  31220817 gaagggaggggagtgtaatttactct 31220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 32867910 - 32867983
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||| ||||||  ||| |||||||| |||||||  || ||||||||||||||||||||||    
T  32867910 tgtatattttaacataagaggggagaggagtgtaattcaagcatcttt-gaggaaagggagtgtaatttactctt 32867983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 43450195 - 43450093
Alignment:
Q  65 aatatgttttgaataaaagcg-agaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttac 162  Q
    ||||||||||||||||||| | || | ||||||||||||||||||||||  |||  |||| |||||||| ||||||| |||  | || ||||||||||||    
T  43450195 aatatgttttgaataaaagaggaggagaatgtatattttaacataagagatgagggaagtgtaattcaagcatctttgaagggatggtagtgtaatttac 43450096  T
Q  163 tct 165  Q
    |||    
T  43450095 tct 43450093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 36848492 - 36848576
Alignment:
Q  80 aaagcgagaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttact 163  Q
    |||| ||| ||| ||||||||||||||||||||| ||||  ||| |||||||| ||||||| | || | ||||||||||||||||    
T  36848492 aaagggaggaaagtgtatattttaacataagaggagagaagagtgtaattcaagcatctttaaggagaggggagtgtaatttact 36848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 42813556 - 42813664
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| || | || ||| |||||||||||||||||||| ||||   ||| |||||||| ||||||| | | || | ||||||||||||    
T  42813556 taatatgttttgaataagaggggaggaaagtgtatattttaacataagagaggaggggagtgtaattcaagcatctttgagggaatgagagtgtaattta 42813655  T
Q  162 ctcttaaaa 170  Q
    |||| ||||    
T  42813656 ctctaaaaa 42813664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 19156083 - 19156158
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctta 167  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||||| | || | | ||||||| ||||||||||    
T  19156083 tgtatattttaacataagaggggagatgagtgtaattcaaacatctttgaggagaggagagtgtagtttactctta 19156158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 20755482 - 20755557
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctta 167  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||||| | || | | ||||||| ||||||||||    
T  20755482 tgtatattttaacataagaggggagatgagtgtaattcaaacatctttgaggagaggagagtgtagtttactctta 20755557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 10412661 - 10412735
Alignment:
Q  91 aatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||||| |||||| || | |||||||| | ||||||| |  ||| |||||||||||||||    
T  10412661 aatgtatattttaacataagaggggagagaattgtaattcaaacttctttcaggggaagagagtgtaatttactc 10412735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 25954 - 26027
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||| |||||||| || | ||| |||||||| ||||||| | | || ||||||||||||||||||    
T  25954 tgtatattttaacttaagaggggaggtgagtgtaattcaaacatctttgagggaaggggagtgtaatttactct 26027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 31221463 - 31221536
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| |||||   ||| |||||||| ||||||| |||| |  |||||||||||||||||    
T  31221463 tgtatattttaacataagaagggaggggagtgtaattcaagcatctttgaagagagaggagtgtaatttactct 31221536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 3341448 - 3341520
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||||| |||   ||| |||||||| ||||||| | | ||| ||||||||||||||||    
T  3341448 tgtatattttaacataagaggagaggagagtgtaattcaagcatctttgagggaaatggagtgtaatttactc 3341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 6184718 - 6184646
Alignment:
Q  93 tgtatattttaacataagagggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||| ||||||||||   ||| |||||||| ||||||| | |  | ||||||||||||||||||    
T  6184718 tgtatattttaacttaagagggaggagagtgtaattcaaacatctttgaggggaggggagtgtaatttactct 6184646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 36687363 - 36687292
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||||||| |||  | |||||||||||||||||    
T  36687363 tgtatattttaacataagaggggagggaagtgtaattcaagcatcttt-aagggaggggagtgtaatttactc 36687292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 40401559 - 40401639
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaaat 172  Q
    ||||||||||||||||||| |||||   ||| |||||||| ||||||| |||  | | |||||||||||||||| ||||||    
T  40401559 tgtatattttaacataagaggggaggggagtgtaattcaagcatctttgaagggaggagagtgtaatttactctaaaaaat 40401639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 14743105 - 14743207
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||  || | || ||| |||||||||||||||||||||| |||| ||| |||||||| ||||||| || ||| | ||||||| ||||    
T  14743105 taatatgttttgaatacgaggggagtaaagtgtatattttaacataagagggaagatgagtataattcaagcatctttgaaaaaatgagagtgtatttta 14743204  T
Q  162 ctc 164  Q
    |||    
T  14743205 ctc 14743207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 24758214 - 24758105
Alignment:
Q  64 taatatgttttgaataaaagcga-gaaaaatgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaaggg-agtgtaattt 160  Q
    ||||||||||||||||| || || | ||| | |||||||||||||||||  |||| ||||| |||||||| ||||||| |||| ||||| |||| |||||    
T  24758214 taatatgttttgaataagagggaaggaaagtatatattttaacataagataggaggtaagtctaattcaaacatcttt-aagagaaggggagtgcaattt 24758116  T
Q  161 actcttaaaaa 171  Q
    |||||||||||    
T  24758115 actcttaaaaa 24758105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 13873993 - 13874062
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    |||||||||||||||||||| |||||  ||| |||||||| ||||||| |||| | ||||||||||||||    
T  13873993 tgtatattttaacataagagaggagaagagtgtaattcaaacatctttaaagagaggggagtgtaattta 13874062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 14014118 - 14014187
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    |||||||||||||||||||| |||||  ||| |||||||| ||||||| |||| | ||||||||||||||    
T  14014118 tgtatattttaacataagagaggagaagagtgtaattcaaacatctttaaagagaggggagtgtaattta 14014187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 31709741 - 31709817
Alignment:
Q  89 aaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||||||| ||||||  ||| ||||| || ||||||| | | || |||||||||||||||||    
T  31709741 aaaatgtatattttaacataagaggggagaggagtgtaatttaagcatctttgagggaaggggagtgtaatttactc 31709817  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 35954002 - 35954074
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||||||| |||  | |||||||||||||||||    
T  35954002 tgtatattttaacataagaggggagggaagtgtaattcaaacatcttttaagggaggggagtgtaatttactc 35954074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 8726822 - 8726720
Alignment:
Q  64 taatatgttttgaataaaa-gcgagaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| | | ||| | | |||||||||||||||| |||| |||  |||| |||||||| ||||||| |||| ||| ||||||||||||    
T  8726822 taatatgttttgaataagatgagaggagagtgtatattttaacata-gaggagagtgaagtataattcaagcatctttaaagagaagtgagtgtaattta 8726724  T
Q  162 ctct 165  Q
    ||||    
T  8726723 ctct 8726720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 11470500 - 11470550
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaa 142  Q
    |||||||||||||||||||||| |||| ||| |||||||| ||||||||||    
T  11470500 tgtatattttaacataagagggaagatgagtgtaattcaagcatctttcaa 11470550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 17449787 - 17449713
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||| ||||||  ||| ||||||||  || ||| |||| |||| ||||||||||||||||    
T  17449787 tgtatattttaacataagaagggagaatagtgtaattcaaatatatttgaagagaaggaagtgtaatttactctt 17449713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 42791519 - 42791445
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||| |||||| |||| |||||||| ||||||  | |  | |||||||||||||||||||    
T  42791519 tgtatattttaacataagaggggagagaagtgtaattcaagcatcttagaggggaggggagtgtaatttactctt 42791445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 13873382 - 13873309
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||||| |||  || | |||||||| ||||||| | | || ||||||||||||||||||    
T  13873382 tgtatattttaacataagaggtgagggaattgtaattcaagcatctttgagggaaggggagtgtaatttactct 13873309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 14013507 - 14013434
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||||| |||  || | |||||||| ||||||| | | || ||||||||||||||||||    
T  14013507 tgtatattttaacataagaggtgagggaattgtaattcaagcatctttgagggaaggggagtgtaatttactct 14013434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 3045606 - 3045678
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactc 164  Q
    |||||||||||||||||||||| |||  | |||||||||| ||||||| | |  | |||||||||||||||||    
T  3045606 tgtatattttaacataagagggaagaagaatttaattcaagcatctttgaggggaggggagtgtaatttactc 3045678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 34173719 - 34173795
Alignment:
Q  91 aatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    ||||||||||||||||||||| |||||   ||| |||||||| ||||||| | |  | |||||||||||||||||||    
T  34173719 aatgtatattttaacataagaggggaggggagtgtaattcaaacatctttgaggggaggggagtgtaatttactctt 34173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 34248031 - 34248143
Alignment:
Q  55 attttttaataatatgttttgaataa-aagcgagaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggag 152  Q
    |||||||  ||||||||||||||||| | | |||| || ||||||||||||| ||||| |||||   ||| |||||||| ||||||| | |  | |||||    
T  34248031 atttttttctaatatgttttgaataagaggggagagaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggag 34248130  T
Q  153 tgtaatttactct 165  Q
    |||||||||||||    
T  34248131 tgtaatttactct 34248143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 23739794 - 23739899
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaattta 161  Q
    ||||||||||||||||| || | || | | ||||||||||||||||||| |||||  |||| |||||||| ||||||| |||  |  |||||||||||||    
T  23739794 taatatgttttgaataagaggggaggagagtgtatattttaacataagaggggagggaagtgtaattcaagcatctttgaagggagtggagtgtaattta 23739893  T
Q  162 ctctta 167  Q
    ||||||    
T  23739894 ctctta 23739899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 46682741 - 46682668
Alignment:
Q  93 tgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||||| |||  |||| |||||||| ||||||| | | || ||||||||||||||||||    
T  46682741 tgtatattttaacataagaggagagcgaagtgtaattcaaacatctttgagggaaggggagtgtaatttactct 46682668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 16536977 - 16537099
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataaga-gggagataagtttaattcaaccatct 137  Q
    |||||||| ||||||||||||||| |   |||||||||||| || | || ||| ||||||||||||||||||| |||||  |||| |||||||| |||||    
T  16536977 ggaggggagtgaaatattttttaaaa---tgttttgaataagaggggaggaaagtgtatattttaacataagaggggagggaagtgtaattcaagcatct 16537073  T
Q  138 ttcaagaaaagggagtgtaatttactc 164  Q
    || | | | | ||||||||||||||||    
T  16537074 ttgagggaga-ggagtgtaatttactc 16537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 19997700 - 19997649
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg 114  Q
    ||||||||||||||||| || | |||||| ||||||||||||||||||||||    
T  19997700 taatatgttttgaataagaggggagaaaagtgtatattttaacataagaggg 19997649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 33475718 - 33475671
Alignment:
Q  85 gagaaaaatgtatattttaacataagagg-gagataagtttaattcaa 131  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  33475718 gagagaaatgtatattttaacataagaggagagataagtgtaattcaa 33475671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 36512058 - 36512144
Alignment:
Q  85 gagaaaaatgtatattttaacataagagg-gagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactcttaaaaa 171  Q
    ||||||||| ||||||||||||||||||| ||||| ||| |||||||| ||||| |||| |  ||  |||||||||||||||| ||||    
T  36512058 gagaaaaatatatattttaacataagaggagagatgagtgtaattcaaacatctctcaa-aggagaaagtgtaatttactctttaaaa 36512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 18406596 - 18406522
Alignment:
Q  93 tgtatattttaacataagag-ggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||| ||||   ||| |||||||| ||||||| ||| ||||| ||| ||||||||||||    
T  18406596 tgtatattttaacataagagaggaggggagtgtaattcaagcatctttaaaggaaaggaagtataatttactctt 18406522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 36604793 - 36604719
Alignment:
Q  93 tgtatattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctt 166  Q
    |||||||||||||||||||||| |||  ||| |||||||| ||||||| | |  | |||||||||||||||||||    
T  36604793 tgtatattttaacataagagggaagaggagtgtaattcaagcatctttgaggggaggggagtgtaatttactctt 36604719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 4666993 - 4666893
Alignment:
Q  39 aggaggggaatgaaatattttttaataatatgttttgaataa-aagcgagaaaaatgtata-ttttaacataaga-gggagataagtttaattcaaccat 135  Q
    |||||||||||||||||||||    ||||||||||||||||| | | |||  || |||||| ||||||||||||| ||||||| ||| |||||||| |||    
T  4666993 aggaggggaatgaaatatttt---ctaatatgttttgaataagaggggagggaagtgtatatttttaacataagaggggagatgagtgtaattcaagcat 4666897  T
Q  136 cttt 139  Q
    ||||    
T  4666896 cttt 4666893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 15357000 - 15356927
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| |||||  |||| |||||||||||||||  | |  | ||||||||||||||||||    
T  15357000 tgtatattttaacataagaggggagggaagtgtaattcaaccatcttaaaggggaggggagtgtaatttactct 15356927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 18407207 - 18407284
Alignment:
Q  91 aatgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactctta 167  Q
    ||||||||||||||||||||| |||||   ||| |||||||| ||||||| | |  | ||||||||||||||||||||    
T  18407207 aatgtatattttaacataagaggggaggagagtgtaattcaaacatctttaaggggaggggagtgtaatttactctta 18407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 42830655 - 42830583
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg 114  Q
    |||||||| ||||||||||| |||||   |||||||||||| || | ||  |||||||||||||||||||||||||    
T  42830655 ggaggggagtgaaatattttctaata---tgttttgaataagaggggagggaaatgtatattttaacataagaggg 42830583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 17109371 - 17109299
Alignment:
Q  93 tgtatattttaacataagagggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    |||||||||||||||||||| ||||  ||| ||||||||  |||||| | |  | ||||||||||||||||||    
T  17109371 tgtatattttaacataagagagagaggagtgtaattcaaatatctttgaggggaggggagtgtaatttactct 17109299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 12254 - 12184
Alignment:
Q  96 atattttaacataagaggg-agataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| |||  | | |||||||| ||||||| ||| || ||||||||||||||||||    
T  12254 atattttaacataagaggggagaggaatgtaattcaagcatctttgaaggaaggggagtgtaatttactct 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 10711 - 10639
Alignment:
Q  40 ggaggggaatgaaatattttttaataatatgttttgaataaaagcg-agaaaaatgtatattttaacataagaggg 114  Q
    |||||||| ||||||||||| |||||   |||||||||||| || | ||  |||||||||||||||||||||||||    
T  10711 ggaggggagtgaaatattttctaata---tgttttgaataagaggggagggaaatgtatattttaacataagaggg 10639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 16552 - 16479
Alignment:
Q  93 tgtatattttaacataaga-gggagataagtttaattcaaccatctttcaagaaaagggagtgtaatttactct 165  Q
    ||||||||||||||||||| |||||   ||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  16552 tgtatattttaacataagatgggaggggagtgtaattcaagcatctttaaagggaggggagtgtaatttactct 16479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 351914 - 351963
Alignment:
Q  64 taatatgttttgaataaaagcg-agaaaaatgtatattttaacataagag 112  Q
    ||||||||||||||||| || | |||||| ||||||||||||||||||||    
T  351914 taatatgttttgaataagaggggagaaaagtgtatattttaacataagag 351963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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