View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_100 (Length: 250)
Name: NF1614_low_100
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12813545 - 12813307
Alignment:
| Q |
1 |
actgatgcctgacattgattgaaattgaattgtgagatctatgttagttatttcatgtatgttgtgtgattaatgcgaggaaatgctatgtaaaacagat |
100 |
Q |
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| T |
12813545 |
actgatgtctgacattgattgaaattgaattgtgagatctatgttagttatttcatgtatgttgtgtgattaatgcgaggaaatgctatgtaaaacagat |
12813446 |
T |
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| Q |
101 |
ctaagttgacagttctgaggaattaaaggaacctattaatattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttctttcaa |
200 |
Q |
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| T |
12813445 |
ctaagttgacagttctgaggaattaaaggaacctattaatattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttctttcaa |
12813346 |
T |
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| Q |
201 |
tggaatatactaataagtgcaaaacaaaagttaagaata |
239 |
Q |
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| T |
12813345 |
tggaatatgctaataagtgcaaaacaaaagttaagaata |
12813307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12750581 - 12750343
Alignment:
| Q |
1 |
actgatgcctgacattgattgaaattgaattgtgagatctatgttagttatttcatgtatgttgtgtgattaatgcgaggaaatgctatgtaaaacagat |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12750581 |
actgatgtctgacattgattgaaattgaattgtgagatctatgttagttatttcatgtatgttgtgtgattaatgtgaggaaatgctatgtaaaacagat |
12750482 |
T |
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| Q |
101 |
ctaagttgacagttctgaggaattaaaggaacctattaatattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttctttcaa |
200 |
Q |
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| T |
12750481 |
ctaagttgacatttctgaggaattaaaggaacctattaatattaagtagactagagacatgcatgataaaaagttaaaaacaacaatatatttctttcaa |
12750382 |
T |
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| Q |
201 |
tggaatatactaataagtgcaaaacaaaagttaagaata |
239 |
Q |
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| T |
12750381 |
tggaatatactaataagtgcaaaacaaaagttaagaata |
12750343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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