View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_109 (Length: 246)

Name: NF1614_low_109
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_109
NF1614_low_109
[»] chr5 (3 HSPs)
chr5 (49-230)||(42490666-42490847)
chr5 (190-230)||(42489560-42489600)
chr5 (13-49)||(42490598-42490634)
[»] chr6 (1 HSPs)
chr6 (7-44)||(34846831-34846868)
[»] chr4 (1 HSPs)
chr4 (7-44)||(33108090-33108127)
[»] chr8 (1 HSPs)
chr8 (7-44)||(10615613-10615650)
[»] chr7 (1 HSPs)
chr7 (7-43)||(10420715-10420751)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 42490666 - 42490847
Alignment:
Q  49 agcatggtcacaagaccaactatctgactaattcaacaataacaaaatgaaggataaatgtctaagacttctcccggaaaagataaaaccagtcagaggt 148  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||    
T  42490666 agcatagtcacaagaccaactatctgtctaattcaacaataacaaaatgaaggataaatgtcctagacttctcccctaaaagataaaaccagtcagaggt 42490765  T
Q  149 atgccttccattaacgttgcatcttcatatggattgaacaatgagaatggaatatcacttctgatttctgactattatgcct 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42490766 atgccttccattaacgttgcatcttcatatggattgaacaatgagaatggaatatcacttctgatttctgactattatgcct 42490847  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 42489560 - 42489600
Alignment:
Q  190 tgagaatggaatatcacttctgatttctgactattatgcct 230  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  42489560 tgagaatggaatataacttctgatttctgactattatgcct 42489600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 42490598 - 42490634
Alignment:
Q  13 aaaatatgacataaacatgtgtttataagtgaaaata 49  Q
    |||||||||||||||||| ||||||||||||||||||    
T  42490598 aaaatatgacataaacatatgtttataagtgaaaata 42490634  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 34846868 - 34846831
Alignment:
Q  7 tcgaagaaaatatgacataaacatgtgtttataagtga 44  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34846868 tcgaacaaaatatgacataaacatgtgtttataagtga 34846831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 33108090 - 33108127
Alignment:
Q  7 tcgaagaaaatatgacataaacatgtgtttataagtga 44  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33108090 tcgaacaaaatatgacataaacatgtgtttataagtga 33108127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 10615613 - 10615650
Alignment:
Q  7 tcgaagaaaatatgacataaacatgtgtttataagtga 44  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  10615613 tcgaacaaaatatgacatgaacatgtgtttataagtga 10615650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 10420751 - 10420715
Alignment:
Q  7 tcgaagaaaatatgacataaacatgtgtttataagtg 43  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  10420751 tcgaaaaaaatatgacatgaacatgtgtttataagtg 10420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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