View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_111 (Length: 243)

Name: NF1614_low_111
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_111
NF1614_low_111
[»] chr8 (5 HSPs)
chr8 (15-194)||(18366065-18366247)
chr8 (195-227)||(7466224-7466256)
chr8 (195-227)||(9288735-9288767)
chr8 (195-227)||(18959012-18959044)
chr8 (195-227)||(26855957-26855989)
[»] chr7 (5 HSPs)
chr7 (189-227)||(33892536-33892574)
chr7 (190-227)||(37973059-37973096)
chr7 (195-227)||(17001308-17001340)
chr7 (195-227)||(21067765-21067797)
chr7 (195-227)||(29615049-29615081)
[»] scaffold0306 (1 HSPs)
scaffold0306 (195-227)||(13813-13845)
[»] scaffold0152 (1 HSPs)
scaffold0152 (195-227)||(21482-21514)
[»] scaffold0010 (1 HSPs)
scaffold0010 (195-227)||(222474-222506)
[»] chr6 (1 HSPs)
chr6 (195-227)||(30385302-30385334)
[»] chr5 (2 HSPs)
chr5 (195-227)||(1152388-1152420)
chr5 (195-227)||(37013803-37013835)
[»] chr4 (2 HSPs)
chr4 (195-227)||(29649953-29649985)
chr4 (195-227)||(34141652-34141684)
[»] chr3 (6 HSPs)
chr3 (195-227)||(10660423-10660455)
chr3 (195-227)||(20832883-20832915)
chr3 (195-227)||(26107149-26107181)
chr3 (195-227)||(27240529-27240561)
chr3 (195-227)||(32580064-32580096)
chr3 (195-227)||(51738011-51738043)
[»] chr2 (4 HSPs)
chr2 (195-227)||(215513-215545)
chr2 (195-227)||(3463561-3463593)
chr2 (195-227)||(7026493-7026525)
chr2 (195-227)||(13833710-13833742)
[»] chr1 (2 HSPs)
chr1 (195-227)||(32589240-32589272)
chr1 (195-227)||(45272469-45272501)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 18366065 - 18366247
Alignment:
Q  15 agttaggcaatgagaa-----acatgataaagctcatatttccaattcttgtattattggaattcttgtacatgaatttgatcaaattcacgtataatag 109  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18366065 agttaggcaatgagaattatgacatgataaagctcatatttccaattcttgtattattggaattcttgtacatgaatttgatcaaattcacgtataatag 18366164  T
Q  110 gccaattgctttatacatttctaataccatgcaacacatgatgtcattttagaagcacacacgataaacacgttcagttatttat 194  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18366165 gccaattgctttatacatttctaat--gttgcaacacatgatgtcattttagaagcacacacgataaacacgttcagttatttat 18366247  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 7466224 - 7466256
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  7466224 gggatgtattggattaggattctatgagatttt 7466256  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 9288767 - 9288735
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  9288767 gggatgtattggattatgattctatgagatttt 9288735  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 18959044 - 18959012
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  18959044 gggatgtattggattaggattctatgagatttt 18959012  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 26855957 - 26855989
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  26855957 gggatgtattggattaggattctatgagatttt 26855989  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 33892574 - 33892536
Alignment:
Q  189 atttatgggatgtattggattaagattctatgagatttt 227  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  33892574 atttaggggatgtattggattaggattctatgagatttt 33892536  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 37973096 - 37973059
Alignment:
Q  190 tttatgggatgtattggattaagattctatgagatttt 227  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  37973096 tttaagggatgtattggattaggattctatgagatttt 37973059  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 17001340 - 17001308
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  17001340 gggatgtattggattaggattctatgagatttt 17001308  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 21067765 - 21067797
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  21067765 gggatgtattggattaggattctatgagatttt 21067797  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 29615081 - 29615049
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  29615081 gggatgtattggattatgattctatgagatttt 29615049  T

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Target: scaffold0306 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 13813 - 13845
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  13813 gggatgtattggattaggattctatgagatttt 13845  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 21514 - 21482
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  21514 gggatgtattggattaggattctatgagatttt 21482  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 222474 - 222506
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||||||||||||| ||||||    
T  222474 gggatgtattggattaagattctatgggatttt 222506  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 30385334 - 30385302
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  30385334 gggatgtattggattaggattctatgagatttt 30385302  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 1152420 - 1152388
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  1152420 gggatgtattggattaggattctatgagatttt 1152388  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 37013803 - 37013835
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  37013803 gggatgtattggattatgattctatgagatttt 37013835  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 29649985 - 29649953
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  29649985 gggatgtattggattaggattctatgagatttt 29649953  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 34141684 - 34141652
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    ||||||||||||||||||||| |||||||||||    
T  34141684 gggatgtattggattaagattttatgagatttt 34141652  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 10660423 - 10660455
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||||||||||||| ||||||    
T  10660423 gggatgtattggattaagattctatgggatttt 10660455  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 20832883 - 20832915
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  20832883 gggatgtattggattaggattctatgagatttt 20832915  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 26107149 - 26107181
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  26107149 gggatgtattggattaggattctatgagatttt 26107181  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 27240561 - 27240529
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  27240561 gggatgtattggattaggattctatgagatttt 27240529  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 32580064 - 32580096
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  32580064 gggatgtattggattaggattctatgagatttt 32580096  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 51738043 - 51738011
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  51738043 gggatgtattggattaggattctatgagatttt 51738011  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 215545 - 215513
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  215545 gggatgtattggattaggattctatgagatttt 215513  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 3463561 - 3463593
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  3463561 gggatgtattggattatgattctatgagatttt 3463593  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 7026493 - 7026525
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  7026493 gggatgtattggattaggattctatgagatttt 7026525  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 13833742 - 13833710
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  13833742 gggatgtattggattaggattctatgagatttt 13833710  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 32589272 - 32589240
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||| ||||||||||||||||    
T  32589272 gggatgtattggattatgattctatgagatttt 32589240  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 45272469 - 45272501
Alignment:
Q  195 gggatgtattggattaagattctatgagatttt 227  Q
    |||||||||||||||||||||||||| ||||||    
T  45272469 gggatgtattggattaagattctatgggatttt 45272501  T

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