View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_112 (Length: 243)
Name: NF1614_low_112
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_112 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 21149075 - 21149309
Alignment:
| Q |
1 |
tttattttcttccttgtatgcaacttcacgcatcacacatcatcgacacaatccaacaaatttttcaccaaatcaacgagcagaaaaactcattagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21149075 |
tttattttcttccttgtatgcaacttcacgcatcacacatcatcgacataatccaacaagtttttcaccaaatcaacgagcagaaaagctcattagaagc |
21149174 |
T |
|
| Q |
101 |
cttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgattttgtccctggaaagatcgtggagaaaaagttctcgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21149175 |
cttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgattttgtccctggaaagatcgtggagaaaaagttctcgtttt |
21149274 |
T |
|
| Q |
201 |
ttggtcattctgatgggctttctattgatattctt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
21149275 |
ttggtcattctgatgggctttctattgataatctt |
21149309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 21143320 - 21143491
Alignment:
| Q |
57 |
caaatttttcaccaaatcaacgagcagaaaaactcattagaagccttaacttattcccaaagaatccggttaagatgatacatggtcatt-ctgtccttg |
155 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||| || || | |||| |||||||||| |||||| |||| ||||| || || |||||| || || | ||| |
|
|
| T |
21143320 |
caaaattttcaccaaaccaacgagctgaaaagcttataaaaagctttaacttattgccaaaggatccagttaatataattcatggtgatcactcta-ttg |
21143418 |
T |
|
| Q |
156 |
atgattttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattga |
228 |
Q |
| |
|
|| |||||||||||||||| |||| ||||| ||||||||||||||| || ||||| |||| | ||||||||| |
|
|
| T |
21143419 |
atcattttgtccctggaaaactcgtcgagaagaagttctcgttttttagtgattctaatggtccttctattga |
21143491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 21123402 - 21123568
Alignment:
| Q |
62 |
ttttcaccaaatcaacgagcagaaaaactcattagaagccttaacttattcccaaagaatccggttaagatgatacatggtcattctgtccttgatgatt |
161 |
Q |
| |
|
|||||||||||||||| ||| ||||| || || |||||| | ||||||||||||||| | | ||||| | || |||||| || | |||||| ||| |
|
|
| T |
21123402 |
ttttcaccaaatcaacaagctgaaaagcttataagaagcttcaacttattcccaaagcaatcagttaatgtaattcatggtgatcattctcttgatcatt |
21123501 |
T |
|
| Q |
162 |
ttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattga |
228 |
Q |
| |
|
|| | || ||||||||||| ||||| |||||||||||||| ||| |||||| ||| | ||||||||| |
|
|
| T |
21123502 |
ttctacccggaaagatcgtcgagaagaagttctcgtttttcggtgattctggtggtccttctattga |
21123568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University