View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_117 (Length: 237)
Name: NF1614_low_117
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_117 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 13983617 - 13983455
Alignment:
| Q |
76 |
gttacgttgttgatattattatgcaagggaaatgtataaggaaaaagaaagaaaaacagaaaggcaagattcattgtattattgcggcttagaagattag |
175 |
Q |
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| T |
13983617 |
gttacgttgttgatattattatgcaaggaaaatgtataaggaaaaagaaagaaaaacagaaaggcaagattcattgtattattgcggtttagaagattag |
13983518 |
T |
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| Q |
176 |
cagtataatttattagtattatatta-nnnnnnnaaattgtgattttggattaaacgtttact |
237 |
Q |
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| T |
13983517 |
tagtataatttattagtattatattattttttttaaattgtgattttggattaaacgtttact |
13983455 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 13985921 - 13985887
Alignment:
| Q |
141 |
aagattcattgtattattgcggcttagaagattag |
175 |
Q |
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| T |
13985921 |
aagattcattgtatcattgcggcttagaagattag |
13985887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 3970356 - 3970398
Alignment:
| Q |
133 |
agaaaggcaagattcattgtattattgcggcttagaagattag |
175 |
Q |
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| T |
3970356 |
agaaagggaagattcattgtatcattgcggcttagaagattag |
3970398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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