View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_119 (Length: 237)
Name: NF1614_low_119
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43217014 - 43216794
Alignment:
| Q |
1 |
tggagaattcaacaaaaacagagatagttgaatgcaagtgnnnnnnnngcctatctcagaaacaaagtaagtaaagatttgctgtctaataaaggcttta |
100 |
Q |
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| T |
43217014 |
tggagaattcaacaaaaacagagatagttgaatgcaagtgttttttt-gcctatctcagaaacaaagtaagtaaagatttgctgtctaataaaggcttta |
43216916 |
T |
|
| Q |
101 |
tatagagaattgtttcgtaaatcttaatcaatacagcttccattcgcatattttgtgaactatttgatctgaatctaacggtcatcaaggcacggaagat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43216915 |
tatagagaattgtttcctaaatcttaatcaatacagcttccattcgcatattttgtgaactatttgatctgaatctaacggtcatcaaggcacggaagat |
43216816 |
T |
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| Q |
201 |
gtctctgttgaacgtcttaggt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43216815 |
gtctctgttgaacgtcttaggt |
43216794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 43226976 - 43227025
Alignment:
| Q |
147 |
catattttgtgaactatttgatctgaatctaacggtcatcaaggcacgga |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43226976 |
catattttgtgaactatttgatctgaatctaacggtcatcaaggcacgga |
43227025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 41651215 - 41651167
Alignment:
| Q |
147 |
catattttgtgaactatttgatctgaatctaacggtcatcaaggcacgg |
195 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
41651215 |
catattttgtgaactatttgatctgaatctaacagtcaccaaggcacgg |
41651167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 41658635 - 41658663
Alignment:
| Q |
194 |
ggaagatgtctctgttgaacgtcttaggt |
222 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
41658635 |
ggaagatgtctctgttgaacgtcttaggt |
41658663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 43210792 - 43210764
Alignment:
| Q |
194 |
ggaagatgtctctgttgaacgtcttaggt |
222 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
43210792 |
ggaagatgtctctgttgaacgtcttaggt |
43210764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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