View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_121 (Length: 236)
Name: NF1614_low_121
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_121 |
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| [»] scaffold0755 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 1557094 - 1557305
Alignment:
| Q |
8 |
gaaagatttccagatggttcttactcgaaaaggatttacgtgctctaattgttgtgatacggtgtaagtctttatactttatctctcaggaccggtttta |
107 |
Q |
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| T |
1557094 |
gaaagatttccagatggttcttactcgaaaaggatttacgtgctataattgttgtgatacggtgtaagtctttatactttatctctcaggaccggtttta |
1557193 |
T |
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| Q |
108 |
actcgttggactttgttttcagtctgttgtcatattttaatgcttccaaatcacaacatcataaggtgctgcaaggatcccatgataaattgaaaacaaa |
207 |
Q |
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| T |
1557194 |
actcgttggactttgttttcagtctgttgtcatattttaatgctgccaaatcacaacatcataaggtgctgcaaggatcccatgataacttgaaaacaaa |
1557293 |
T |
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| Q |
208 |
cagagaccgcac |
219 |
Q |
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| T |
1557294 |
cagagaccgcac |
1557305 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 22005672 - 22005523
Alignment:
| Q |
47 |
gtgctctaattgttgtgatacggtgtaagtctttatactttatctctcaggaccggttttaactcgttggactt--tgttttcagtctgttgtcatattt |
144 |
Q |
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| T |
22005672 |
gtgctctaattgttgtgatacaatttaagtctttattatttatctcacatgaccagttttaactcattgcattttctgttttcaatttgtcatcatattt |
22005573 |
T |
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| Q |
145 |
taatgcttccaaatcaca--acatcataaggtgctgcaaggatcccatga |
192 |
Q |
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| T |
22005572 |
tgttgctgccaaatcacatgagatcagaaggtgctgctaggttccaatga |
22005523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 3721 - 3785
Alignment:
| Q |
119 |
tttgttttcagtctgttgtcatattttaatgcttccaaatcacaacatcataaggtgctgcaagg |
183 |
Q |
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| T |
3721 |
tttgttttcagtctgtcgtcatattttgctgctgccaaatctcatgatcataaggtgttgcaagg |
3785 |
T |
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