View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_124 (Length: 235)
Name: NF1614_low_124
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_124 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4810548 - 4810328
Alignment:
| Q |
1 |
tgattgagatataaaaatcacaccgatttcttggattgagaccttacactcacattaagttcactaactattataaaacctgattgttccctctccatgc |
100 |
Q |
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| T |
4810548 |
tgattgagatataaaaatcacaccgatttcttggattgagaccttacactcacattaagtccactaactattataaaacctgattgttccctctccatgc |
4810449 |
T |
|
| Q |
101 |
attattcaccaacactaaaatcactatttacaatgacttcctttttcttatccttactttgttgttccttgcttctcttatgcttgttcctcatgtgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4810448 |
attattcaccaacactaaaatcactatttacaatgacttcctttttcttatacttactttgttgttccttgcttctcttatgcttgttcctcatgtgcat |
4810349 |
T |
|
| Q |
201 |
gctgattcttacaaacaactt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
4810348 |
gctgattcttacaaacaactt |
4810328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 4536893 - 4536792
Alignment:
| Q |
107 |
caccaacactaaaatcactatttacaatgacttcctttttcttatccttact-ttgttgttccttgcttctcttatgcttgttcctcatgtgcatgctga |
205 |
Q |
| |
|
||||||||||||| ||||| ||| |||| |||| |||| | |||||||||| ||||||||||||||| | ||||| |||||| |||| | || |||||| |
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| T |
4536893 |
caccaacactaaagtcacttcttaaaatggcttcattttacctatccttactattgttgttccttgctgcccttatccttgtttctcaagggcttgctga |
4536794 |
T |
|
| Q |
206 |
tt |
207 |
Q |
| |
|
|| |
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|
| T |
4536793 |
tt |
4536792 |
T |
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