View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_127 (Length: 233)
Name: NF1614_low_127
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_127 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29012383 - 29012164
Alignment:
| Q |
1 |
atgtaatactgatatgctagtggccgatgttttttctttaaaactcgatatctggaccaagaaccgactaatccggagatcaatcccattgtccacttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29012383 |
atgtaatactgatatgctagtggccgatgttttttctttaaaactcgatatctggaccaagaaccgactaatccggagatcaatcccattgtccacttgt |
29012284 |
T |
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| Q |
101 |
cagtataatgagggttaattatcttttcacttttatgtatttcatgaattggaacaatttcgtgctttcgatccgaagcagcatttaaatagggttagca |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29012283 |
tagtataatgagggttaattatcttttgacttttatgtatttcatgaattggaacaatttcgtgctttcgatccgaagcagcatttaaatagggttagca |
29012184 |
T |
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| Q |
201 |
ttttgagattccacctcttt |
220 |
Q |
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||||||||||| |||||||| |
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| T |
29012183 |
ttttgagattctacctcttt |
29012164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32642 - 32862
Alignment:
| Q |
1 |
atgtaatactgatatgctagtggccgatgttttttctttaaaactcgatatctggaccaagaaccgactaatccggagatcaatcccattgtccacttgt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
32642 |
atgtaatactgatatgctagtggccaatgttttttctttaaaactcgatatccggttcaagaaccgactaatccggggatcaatcccattgtccaattgt |
32741 |
T |
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| Q |
101 |
cagtataatgagggttaattatcttttcacttttatgtatttcatg-aattggaacaatttcgtgctttcgatccgaagcagcatttaaatagggttagc |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
32742 |
tagtataatgagggttaattatcttttgacttttatgtatttcaagaaattggaacaatttcgggctttcgatctgaagcatcatttaaatagggttagc |
32841 |
T |
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| Q |
200 |
attttgagattccacctcttt |
220 |
Q |
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| T |
32842 |
attttgagattctacctcttt |
32862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 25852422 - 25852351
Alignment:
| Q |
30 |
ttttttctttaaaactcgatatctggaccaagaaccgactaatcc--ggagatcaatcccattgtccacttg |
99 |
Q |
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|||||| ||||||||||| |||| || |||||||||||||||||| || || ||||||||||| ||||||| |
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| T |
25852422 |
ttttttttttaaaactcggtatccggtccaagaaccgactaatccgaggggaccaatcccattgcccacttg |
25852351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 31140092 - 31140155
Alignment:
| Q |
30 |
ttttttctttaaaactcgatatctggaccaagaaccgactaatccggagatcaatcccattgtc |
93 |
Q |
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|||||| ||||||||||| ||||||| ||||| |||||||||||| | || |||||||| |||| |
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| T |
31140092 |
ttttttttttaaaactcggtatctggtccaaggaccgactaatccagggaccaatcccactgtc |
31140155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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