View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_13 (Length: 558)
Name: NF1614_low_13
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Original strand, 48500860 - 48501409
Alignment:
| Q |
9 |
acatcatcaccgtgtttaaaacctaacctcgccacatggagacgcatattatcaacacgtgtattaacccgaatgaatccatcataaaatccaactgtat |
108 |
Q |
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| T |
48500860 |
acatcatcaccgtgtttaaaacctaacctcgccacatggagacgcatattatcaacacgtgtattaacccgaatgaatccatcataaaatccaactgtat |
48500959 |
T |
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| Q |
109 |
attccaactgcacgtgtgcttccaattggtggtgagctagaccgtacctgattattgactccttagcatcaataccttgaaatttaccattttgcccata |
208 |
Q |
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| T |
48500960 |
attccaactgcacgtgtgcttccaattggtggtgagctagaccgtacctgattattgactccttagcatcaataccttgaaatttaccattttgcccata |
48501059 |
T |
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| Q |
209 |
gtttctcgccagtttcatcgtcataaccggcgcgtagcctttcagaatccaaaaaccatgagactccgtcgcgtaagagaatttcggattcgatggcacg |
308 |
Q |
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| T |
48501060 |
gtttctcgccagtttcatcgtcataaccggcgcgtagcctttcagaatccaaaaaccatgagactccgtcgcgtaagagaatttcggattcgatggcacg |
48501159 |
T |
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| Q |
309 |
agtgtttgtaatcctacacccaattctcttataatgcaccattttgctattatgtacccaagggtgcgcatgaaacagagttcagtgtctacacctacgg |
408 |
Q |
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| T |
48501160 |
agtgtttgtaatcctacacccaattctcttataatgcaccattttgctattatgtacccaagggtgcgcatgaaacagagttcagtgtctacacctacgg |
48501259 |
T |
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| Q |
409 |
taataaagaaggttcttagcaccgaagctagtttctttgacaacgcagtttctagaaccggagcgagtaacgagtggaaatagagtgaacctgcttcgct |
508 |
Q |
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| T |
48501260 |
taataaagaaggttcttagcaccgaagctagtttctttgacaacgcagtttctagaaccggagcgagtaacgagtggaaatagagtgaacctgcttcgct |
48501359 |
T |
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| Q |
509 |
aggcgcgtcgcaagcgcataaccaaaagagacgaatggtgaaaacaaggt |
558 |
Q |
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| T |
48501360 |
aggcgcgtcgcaagcacatagccaaaagagacgaatggtgaaaacaaggt |
48501409 |
T |
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