View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_14 (Length: 554)
Name: NF1614_low_14
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 549
Target Start/End: Original strand, 52798557 - 52799099
Alignment:
| Q |
9 |
agcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatggtgtgtgat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
52798557 |
agcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatagcgtgtgat |
52798656 |
T |
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| Q |
109 |
gaaacaatatcagatggacnnnnnnnnctacacttagtttttattaatatggagaaaacaattgatagagcatcaagagagatttgtggaaaatcatata |
208 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
52798657 |
gaaacgatatcagatggacaaaaaatactacacttagtttttattaatatggagaaaacaattgatagatcaccaagagagatttgtggaaaatcatata |
52798756 |
T |
|
| Q |
209 |
gaagaaagaggttggtgttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagagc |
308 |
Q |
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| T |
52798757 |
gaagaaagaggttagggttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagggc |
52798856 |
T |
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| Q |
309 |
cgactcaattattctatgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaagacgacca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52798857 |
cgactcaattattctatgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaaggcgacca |
52798956 |
T |
|
| Q |
409 |
cctcgtctcttagcatgatgcaacacaaaatcttcctaaaattggatagccatcttattcccaagcttcctaaaaatcgaaatttggagtgaaccgcctt |
508 |
Q |
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| T |
52798957 |
cctcgtctcttagcatgatgcaacacaaaatcttcctaaaattggatagtcatcttattcccaagcttcctaaaaattaaaatttggagtgaaccgcctt |
52799056 |
T |
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| Q |
509 |
cacaatccttcatcaca--cacaacttaagtccttccaccaac |
549 |
Q |
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| T |
52799057 |
cacaatccttcaccacacccacaacttaagtccttccaccaac |
52799099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
44 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
93 |
Q |
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|||||||||||||||||| | | ||| |||||||||||||| |||||||| |
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| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 13148398 - 13148445
Alignment:
| Q |
14 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
61 |
Q |
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| T |
13148398 |
agactaagaaaagagactcgagttatcgataaccaatttgattttatg |
13148445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 20499184 - 20499232
Alignment:
| Q |
13 |
gagactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
61 |
Q |
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||||||||||||||| | ||||||||||| |||||||||| ||||||| |
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| T |
20499184 |
gagactaagaaaataagcgcaagttattgataaccaatttggttttatg |
20499232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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