View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_16 (Length: 540)
Name: NF1614_low_16
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 540
Target Start/End: Original strand, 43322856 - 43323383
Alignment:
| Q |
15 |
aaagggttaatgatgatcagggttcaccaacgaccacaaattataactagctatatccaaaatcttaagacattgtgatttgtgaatatgtgtcacttct |
114 |
Q |
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| T |
43322856 |
aaagggttaatgatgatcggggctcaccaatgaccacaaattataattagatatatccaaaatcttaagacattgtgatttatgaatatgtgtcacttct |
43322955 |
T |
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| Q |
115 |
cttataaagaactctctgattcgattcttcaataagatatggttttaactttatttttcttttgactttataactcttgaccgattgcccc-tnnnnnnn |
213 |
Q |
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| T |
43322956 |
cttataaagagctctctgattcgattcttcaataagatatggttttaactttctttttcttttgactctataactcttaacctattgccccctaaaaaaa |
43323055 |
T |
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| Q |
214 |
ctgacctatctaacatcgaacttgtttatagtcgatgtggaacataacaactcattcttgaatccaataattttctcaagtgtgagcgcctcccatatcc |
313 |
Q |
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| T |
43323056 |
ctgacctatctaacatcgaacttgtttatagtcgatgtggaatataacgactcattcttgaatccaataatcttctcaagtgtgagcgcctcccatatcc |
43323155 |
T |
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| Q |
314 |
aacaccccatccttttatttcttttatagcttgatcatttgatggatacatttcatgagtaatatgttggattttatggattagccttaatcaaccgtta |
413 |
Q |
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| T |
43323156 |
aacaccccatccttttatttcttttataccttgatcatttgatggatacatttcatgagtaatatgttggattttatggattagccttaatcaaccgtta |
43323255 |
T |
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| Q |
414 |
aaataatatattgatcttatta-tttttgttcnnnnnnnncaattcaaataataaatttgtatatcaactatttaaatttaattatagtaatgcactaaa |
512 |
Q |
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| T |
43323256 |
aaataatatattaatcttattattttttgttcaaaaaaaacaattcaaataataaatttgtatatcaactatttaaatttaattatagtaatgcactaaa |
43323355 |
T |
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| Q |
513 |
cttaaaatagatgaatatttattattgt |
540 |
Q |
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| T |
43323356 |
cttaaaatagatgaatatttattattgt |
43323383 |
T |
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Back To:
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 29676417 - 29676367
Alignment:
| Q |
375 |
atatgttggattttatggattagccttaatcaaccgttaaaataatatatt |
425 |
Q |
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| T |
29676417 |
atatgttggattttatggattaaccttaatcaataattaaaataatatatt |
29676367 |
T |
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