View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_19 (Length: 490)
Name: NF1614_low_19
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 50766923 - 50766463
Alignment:
| Q |
13 |
aaaatgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccannnnnnnnnnnnnnnnnagcaatctaaata |
112 |
Q |
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| T |
50766923 |
aaaatgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccattttatttttcatttttagcaatctaaata |
50766824 |
T |
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| Q |
113 |
tttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtggc |
212 |
Q |
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| T |
50766823 |
tttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtgac |
50766724 |
T |
|
| Q |
213 |
aatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcataacaggaaagtaaagaacagattgtgttaggtgtgact |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
50766723 |
aatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcatagcaggaaagtaaagaacggattgtgttaggtgtgact |
50766624 |
T |
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| Q |
313 |
cctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaatttaaatttgttca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766623 |
cctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaatttaaatttgttca |
50766524 |
T |
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| Q |
413 |
gatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataattta |
473 |
Q |
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| T |
50766523 |
gatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataattta |
50766463 |
T |
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