View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_2 (Length: 838)
Name: NF1614_low_2
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 92 - 726
Target Start/End: Complemental strand, 22074211 - 22073576
Alignment:
| Q |
92 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatgggaaaatgtcaaactatatctttttcacttccaaaagcgtg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
22074211 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatggaaaaatgtcaaactatatcttttccccttccaaaagcgtg |
22074112 |
T |
|
| Q |
192 |
gttaacttcatttatagaacaacatnnnnnnnnctctctcatcacttttattaactaaatacaagttctaaaactaacatatgtcatggatcctcttcaa |
291 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22074111 |
gttaacttcatttatagaaaaacataaaaaaaactctctcatcacttttattaactaaatacaagttctaaaactaacctatgtcatggatcctcttcaa |
22074012 |
T |
|
| Q |
292 |
cttaggcaacaagaacaacagtcaacttcaa-agagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactgatattaacacacgaactt |
390 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || || |
|
|
| T |
22074011 |
cttaggcaaaaagaacaacagtcaacttcaagaaagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactaacattaacacaccaattt |
22073912 |
T |
|
| Q |
391 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaatttgaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22073911 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaattttaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
22073812 |
T |
|
| Q |
491 |
aattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttgatggaagcagaatccaa |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22073811 |
aattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttaatggaagcagaatccaa |
22073712 |
T |
|
| Q |
591 |
ccagaggtcgcggttctaagcagagaaaaaagaaatataattattcaaaataacaagttacatgtgccattaacaggtcatgccgaatcttcatctatat |
690 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22073711 |
ccagaggtcgcagttctaagcagagaaaaaagaaaaagaattttgcaaaataacaagttagatgtgccattaacaggtcatgctgaatcttcatctatat |
22073612 |
T |
|
| Q |
691 |
ccagacgcttaaaccgaaccaatgttgtacacccac |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22073611 |
ccagacgcttaaaccgaaccaatgttgtacacccac |
22073576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 22076433 - 22076346
Alignment:
| Q |
10 |
catcatcatcaatttacctgcttcaacagtaatgtcaaatcccactttctcctacattagccactctaccaaaagctaactgtccttt |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
22076433 |
catcatcatcaatttacctgcttgaacagtaatgtcaaattccactttctcctacattagcccctctaccaaaaattaacggtccttt |
22076346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University