View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_20 (Length: 489)
Name: NF1614_low_20
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 37793255 - 37793697
Alignment:
| Q |
13 |
aatatcatatgagaatccaattcttgatgacaatgaccttcattttatggatgcatacatagaga------------atttctggtcagagccatatatg |
100 |
Q |
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| T |
37793255 |
aatatcatatgagaatccaattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatg |
37793354 |
T |
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| Q |
101 |
attgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtc |
200 |
Q |
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| T |
37793355 |
attgacagttcacatttccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtc |
37793454 |
T |
|
| Q |
201 |
cagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatt |
300 |
Q |
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| T |
37793455 |
cagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatt |
37793554 |
T |
|
| Q |
301 |
tcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttact |
400 |
Q |
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| T |
37793555 |
tcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttact |
37793654 |
T |
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| Q |
401 |
cttttgaaaatgccatgccatgtagataatactaataatttcatttgaa |
449 |
Q |
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| T |
37793655 |
cttttgaaaatgacatgcc------ataatactaataatttcatttgaa |
37793697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 74 - 280
Target Start/End: Original strand, 37792860 - 37793066
Alignment:
| Q |
74 |
gagaatttctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagt |
173 |
Q |
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| T |
37792860 |
gagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgaga |
37792959 |
T |
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| Q |
174 |
acaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcaca |
273 |
Q |
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| T |
37792960 |
acaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcaca |
37793059 |
T |
|
| Q |
274 |
tgaaaat |
280 |
Q |
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| T |
37793060 |
tgaaaat |
37793066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 37809559 - 37809655
Alignment:
| Q |
313 |
tgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatg |
412 |
Q |
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||||||||||||||||||| |||| ||||||| |||| |||||||||| || | ||||||| ||||| ||||||||| ||| |||||||||||||||| |
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| T |
37809559 |
tgaacatgaatactttagtcctgtatacgatgcagaactttggagcca---tggaaaataaatcgttactgtaatgtgggggtatactcttttgaaaatg |
37809655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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