View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_22 (Length: 486)

Name: NF1614_low_22
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_22
NF1614_low_22
[»] chr3 (4 HSPs)
chr3 (12-471)||(6789761-6790221)
chr3 (373-471)||(17402773-17402871)
chr3 (373-471)||(1140143-1140241)
chr3 (17-184)||(31135116-31135283)
[»] chr4 (12 HSPs)
chr4 (15-458)||(23566003-23566445)
chr4 (334-462)||(52518911-52519039)
chr4 (373-471)||(7040503-7040601)
chr4 (373-471)||(18656250-18656348)
chr4 (371-471)||(23564664-23564764)
chr4 (283-469)||(18395544-18395730)
chr4 (380-462)||(52520753-52520835)
chr4 (284-391)||(18320122-18320229)
chr4 (284-391)||(18398454-18398561)
chr4 (373-467)||(56074637-56074731)
chr4 (416-470)||(52545137-52545191)
chr4 (424-470)||(54296571-54296617)
[»] chr6 (16 HSPs)
chr6 (334-471)||(5377020-5377157)
chr6 (373-471)||(5378875-5378973)
chr6 (317-469)||(24544763-24544915)
chr6 (32-233)||(24546227-24546428)
chr6 (372-470)||(1088643-1088742)
chr6 (380-471)||(19645298-19645389)
chr6 (138-262)||(15866935-15867059)
chr6 (138-262)||(33867787-33867911)
chr6 (300-391)||(33866322-33866413)
chr6 (297-391)||(14619145-14619239)
chr6 (405-466)||(8915615-8915676)
chr6 (325-391)||(15866803-15866869)
chr6 (405-471)||(9415210-9415276)
chr6 (405-470)||(20985831-20985896)
chr6 (156-234)||(14619311-14619389)
chr6 (405-433)||(31528957-31528985)
[»] chr1 (8 HSPs)
chr1 (334-471)||(17449452-17449589)
chr1 (138-391)||(9310635-9310897)
chr1 (138-391)||(3283024-3283292)
chr1 (380-462)||(16808576-16808658)
chr1 (407-470)||(48941747-48941810)
chr1 (136-234)||(5926042-5926140)
chr1 (424-470)||(5924828-5924874)
chr1 (373-433)||(23689500-23689560)
[»] scaffold0251 (2 HSPs)
scaffold0251 (37-263)||(4901-5127)
scaffold0251 (300-370)||(4720-4790)
[»] chr7 (12 HSPs)
chr7 (334-462)||(28126366-28126494)
chr7 (17-391)||(21632606-21632969)
chr7 (373-471)||(20046486-20046584)
chr7 (373-471)||(28014264-28014362)
chr7 (373-471)||(44963305-44963403)
chr7 (380-462)||(28124585-28124667)
chr7 (380-462)||(4895735-4895817)
chr7 (373-470)||(25471762-25471859)
chr7 (132-234)||(6686978-6687080)
chr7 (405-471)||(8405649-8405715)
chr7 (373-469)||(29597963-29598059)
chr7 (108-157)||(9879503-9879552)
[»] chr8 (12 HSPs)
chr8 (372-471)||(30224372-30224471)
chr8 (373-471)||(6428883-6428981)
chr8 (374-471)||(5567568-5567665)
chr8 (372-459)||(3375424-3375511)
chr8 (373-471)||(25249148-25249246)
chr8 (387-453)||(36535856-36535922)
chr8 (416-470)||(31032038-31032092)
chr8 (416-470)||(19473674-19473728)
chr8 (416-470)||(19544599-19544653)
chr8 (416-470)||(19588043-19588097)
chr8 (416-470)||(3379149-3379203)
chr8 (416-470)||(14939657-14939711)
[»] chr2 (5 HSPs)
chr2 (372-471)||(29758262-29758361)
chr2 (317-374)||(18739909-18739966)
chr2 (416-454)||(18612074-18612112)
chr2 (424-464)||(17148670-17148710)
chr2 (433-471)||(8759115-8759153)
[»] chr5 (6 HSPs)
chr5 (125-277)||(33688440-33688592)
chr5 (317-398)||(25076050-25076131)
chr5 (317-398)||(25134019-25134100)
chr5 (418-470)||(20012959-20013011)
chr5 (37-172)||(25075761-25075896)
chr5 (37-172)||(25133730-25133865)
[»] scaffold0189 (1 HSPs)
scaffold0189 (378-470)||(19088-19180)
[»] scaffold0057 (1 HSPs)
scaffold0057 (416-470)||(58928-58982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (432-470)||(39287-39325)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 6790221 - 6789761
Alignment:
Q  12 atgaagaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacga 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6790221 atgaagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacca 6790122  T
Q  112 tgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6790121 tgttgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatcgagaatccatcaaattctggttcgattacaggagttgaaaccggagtaat 6790022  T
Q  212 tggagactcgaaactgccgaaaaggatgcgatcgtgagaagatgaagtttccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcg 311  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6790021 tggagactcgaaactgccgaaaacgatgcgatcgtgagaagatgaagtttccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcg 6789922  T
Q  312 atgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcataga 411  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789921 atgtctgaatcgaaagcagaagcatcatcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatcatagggagagaagtcataga 6789822  T
Q  412 tgtaagc-aagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789821 tgtaagcaaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 6789761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 17402773 - 17402871
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17402773 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 17402871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 1140241 - 1140143
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  1140241 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 1140143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 31135116 - 31135283
Alignment:
Q  17 gaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttg 116  Q
    ||||||||| ||||  ||| ||||||||  ||||||||  | |  ||||||||| |||||   | ||||||||||| ||| ||  | || ||||||||||    
T  31135116 gaaatcagagtcgcggttcttcaattcatattcaagaaccttctgtttctcatcatcttgtagaacaacaaacacaaaatcgtcgtaatcgacgatgttg 31135215  T
Q  117 cagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttc 184  Q
    |   ||| |||||| ||| |||| || ||||||| | |||||||||||||||||||||||| ||||||    
T  31135216 ctagaagcagtaacgagaacacaagatatctccctagtcttgatggagaatccatcaaattatggttc 31135283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 23566003 - 23566445
Alignment:
Q  15 aagaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgt 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |||||||    
T  23566003 aagaaatcagagtcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcaaattaacaaacacagaattgtcttcatttacgatgt 23566102  T
Q  115 tgcagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattgg 214  Q
    ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  23566103 tgctgcaaggagcaacaagaacacatgaaatctccccaatcttgatggagaatccatcaaattctggtgcgattacatgagttgaaactggagtaattgg 23566202  T
Q  215 agactcgaaactgccgaaaaggatgcgatcgtgagaagatgaagtttccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcgatg 314  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23566203 agactcgaaactgccaaaaaagatgcgatcttgagaagatgaagtttccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcggtg 23566302  T
Q  315 tctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgt 414  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| |||||||||||||    
T  23566303 tctgaatcgaaagcggaagcatcatcaacttcctccctagggtatcgctctgataccacattaagaatcatggaatcata-ggagaaaagtcatagatgt 23566401  T
Q  415 aagcaagatagcaagcataagagtactcatgtgggagatactca 458  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  23566402 aagcaagatagcaagcataagagtacccatgagggagatactca 23566445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 52519039 - 52518911
Alignment:
Q  334 catcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcata 433  Q
    |||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||    
T  52519039 catcttcatcttcctccctagggtatcgctctgataccatgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcata 52518940  T
Q  434 agagtactcatgtgggagatactcataga 462  Q
    |||| ||||||||||||||||||||||||    
T  52518939 agagaactcatgtgggagatactcataga 52518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 7040601 - 7040503
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  7040601 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 7040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 18656348 - 18656250
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  18656348 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 18656250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 371 - 471
Target Start/End: Original strand, 23564664 - 23564764
Alignment:
Q  371 catgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||||    
T  23564664 catgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcatt 23564763  T
Q  471 g 471  Q
    |    
T  23564764 g 23564764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 283 - 469
Target Start/End: Original strand, 18395544 - 18395730
Alignment:
Q  283 ctgcatcatcagattcttcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaat 382  Q
    |||||||||||||||||||||||||||| || | |||||| ||||| ||||||||||||| ||| ||||||||||||| |||||||| ||||| |  |||    
T  18395544 ctgcatcatcagattcttcatcttcatcaatttttgaatctaaagcagaagcatcatcatattcatccctagggtatcgctctgatatcatgtaagtaat 18395643  T
Q  383 catggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcat 469  Q
    |||| ||||  | ||| | | |||||||   | ||||||| ||  |||||||||||| |||||||||||||||||||| | ||||||    
T  18395644 catgaaatcccacggataaaggtcatagtgattagcaagaaagagagcataagagtattcatgtgggagatactcatatagactcat 18395730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 380 - 462
Target Start/End: Complemental strand, 52520835 - 52520753
Alignment:
Q  380 aatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 462  Q
    ||||||||||||||||||||| |  ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  52520835 aatcatggaatcatagggagaaagatcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactcataga 52520753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 18320229 - 18320122
Alignment:
Q  284 tgcatcatcagattcttcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatc 383  Q
    |||||||| |||||||||||||||||| || |  |||||  |||||||||||||||||||||| ||||||||||||| || ||||||||| |||  ||||    
T  18320229 tgcatcattagattcttcatcttcatcaattttagaatctgaagcggaagcatcatcatcttcatccctagggtatctctatgataccatattagtaatc 18320130  T
Q  384 atggaatc 391  Q
    ||||||||    
T  18320129 atggaatc 18320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 18398454 - 18398561
Alignment:
Q  284 tgcatcatcagattcttcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatc 383  Q
    |||||||| |||||||||||||||||| || |  |||||  |||||||||||||||||||||| ||||||||||||| || ||||||||| |||  ||||    
T  18398454 tgcatcattagattcttcatcttcatcaattttagaatctgaagcggaagcatcatcatcttcatccctagggtatctctatgataccatattagtaatc 18398553  T
Q  384 atggaatc 391  Q
    ||||||||    
T  18398554 atggaatc 18398561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 467
Target Start/End: Original strand, 56074637 - 56074731
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaag-tcatagatg-taagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactc 467  Q
    ||||| |||||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  56074637 tgttatgaatcatggaatcataggga-agaaggtcata-atgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactc 56074731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 52545137 - 52545191
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  52545137 agcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcatt 52545191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 54296617 - 54296571
Alignment:
Q  424 agcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  54296617 agcaagcataagagtactgatgagggagatactcatagaaactcatt 54296571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 9e-65; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 5377157 - 5377020
Alignment:
Q  334 catcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcata 433  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5377157 catcttcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcata 5377058  T
Q  434 agagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5377057 agagtactcatgtgggagatactcatagaaactcattg 5377020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 5378973 - 5378875
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5378973 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 5378875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 317 - 469
Target Start/End: Complemental strand, 24544915 - 24544763
Alignment:
Q  317 tgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgtaa 416  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||  | ||| | |  ||||||   |||    
T  24544915 tgaatcgatagcggaagcatcatcatcttcatccctagggtatcgctctgataccatgttagtaatcatggaatcccaaggataaagatcatagtgataa 24544816  T
Q  417 gcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcat 469  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  24544815 gcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcat 24544763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 24546428 - 24546227
Alignment:
Q  32 attcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaaca 131  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||| || ||| |||||||||||||||||||||   |||    
T  24546428 attcttcaattcaggttcaagaatctccaatttctcattttcttgcgaatcaacgaacacacaatcgtcttctttgacgatgttgcagcaaggatcgaca 24546329  T
Q  132 agagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccga 231  Q
    |  || || |||||||| ||||||||||||||||||||| | |||| | |||||| |  |||| | |||| |||   |||||||||||||||||| ||||    
T  24546328 actgcgcaagaaatctcaccaatcttgatggagaatccaacgaatttttgttcgactgaaggattagaaatcggttgaattggagactcgaaactaccga 24546229  T
Q  232 aa 233  Q
    ||    
T  24546228 aa 24546227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 372 - 470
Target Start/End: Original strand, 1088643 - 1088742
Alignment:
Q  372 atgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactc-atagaaactcatt 470  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||    
T  1088643 atgttaagaatcatggaatcataggaagagaagtcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcatt 1088742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 471
Target Start/End: Original strand, 19645298 - 19645389
Alignment:
Q  380 aatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||    
T  19645298 aatcatggaatcatagggagaaaagtcatagatgtaaccaagatagcaagtataagagtactcatgagggagatactcaaagaaattcattg 19645389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 15867059 - 15866935
Alignment:
Q  138 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaagga 237  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||  |||||| |||||||||  ||||||||| || ||||||||||||| ||    
T  15867059 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaaga 15866960  T
Q  238 tgcgatcgtgagaagatgaagtttc 262  Q
    ||| ||||||||| | |||||||||    
T  15866959 tgcaatcgtgagaggctgaagtttc 15866935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 33867911 - 33867787
Alignment:
Q  138 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaagga 237  Q
    ||||||||||| ||||| |||| |||||||||||| |||| ||||||||||  |||||| |||||||||  ||||||||| || ||||||||||||| ||    
T  33867911 catgaaatctcaccaattttgacggagaatccatcgaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaaga 33867812  T
Q  238 tgcgatcgtgagaagatgaagtttc 262  Q
    ||| ||||||||| | |||||||||    
T  33867811 tgcaatcgtgagaggctgaagtttc 33867787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 33866413 - 33866322
Alignment:
Q  300 tcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
    |||||||||||||   |||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||    
T  33866413 tcatcttcatcgagtgctgaatcggaagcagaagcatcatcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatc 33866322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 14619239 - 14619145
Alignment:
Q  297 tcttcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
    |||||||||||||||    |||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||| | |||| ||||||    
T  14619239 tcttcatcttcatcggaagctgaatcgcaagcggaagcatcagcatcttcatccctagggtatcgctctgataccatgttatggatcaaggaatc 14619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 466
Target Start/End: Complemental strand, 8915676 - 8915615
Alignment:
Q  405 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaact 466  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcatagaaact 8915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 15866869 - 15866803
Alignment:
Q  325 aagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||    
T  15866869 aagcggaagcatcatcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatc 15866803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 9415276 - 9415210
Alignment:
Q  405 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||| |||||| ||| | | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  9415276 tcataaatgtaaacaaaagaacaaacataagagtactcatgtgggagatactcatagaaactcattg 9415210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 20985831 - 20985896
Alignment:
Q  405 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    |||||||||||| |||| | |||||||||||||||||||||||| ||||||| ||| ||| |||||    
T  20985831 tcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagatacttataaaaattcatt 20985896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 14619389 - 14619311
Alignment:
Q  156 ttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaa 234  Q
    |||| ||||||| |||| |||| ||||||||||  |||||| ||| |||||  |||||||||||||||||| |||||||    
T  14619389 ttgacggagaattcatcgaattttggttcgattgaaggagtagaatccggaacaattggagactcgaaactaccgaaaa 14619311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 433
Target Start/End: Complemental strand, 31528985 - 31528957
Alignment:
Q  405 tcatagatgtaagcaagatagcaagcata 433  Q
    |||||||||||||||||||||||||||||    
T  31528985 tcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 17449589 - 17449452
Alignment:
Q  334 catcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcata 433  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |    
T  17449589 catcttcatcttccttcctagggtatcgctctgataccatgttaagaatcatggaatcatagggagaaaggtcatagatgtaagcaagatagcaagcaaa 17449490  T
Q  434 agagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17449489 agagtactcatgtgggagatactcatagaatctcattg 17449452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 138 - 391
Target Start/End: Complemental strand, 9310897 - 9310635
Alignment:
Q  138 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaagga 237  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||  |||||| |||||||||  ||||||||| || ||||||||||||| ||    
T  9310897 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaaga 9310798  T
Q  238 tgcgatcgtgagaagatgaagtttccggaat---cgcagaa---gcagaagctgcatc---atcagattcttcatcttcatcgatgtctgaatcgaaagc 328  Q
    ||| ||||||||| | |||||||||  ||||    ||||||   |||  | || ||||   | || | || |||||||||||||   |||||||| ||||    
T  9310797 tgcaatcgtgagaggctgaagtttcaagaattggtgcagaaaccgcaagaacttcatcactaacaaaatcgtcatcttcatcgagtgctgaatcggaagc 9310698  T
Q  329 ggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||  ||||| ||||||    
T  9310697 ggaagcatcatcatcatcatccctagggtatcgctctgataccatgttagtaatcaaggaatc 9310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 138 - 391
Target Start/End: Complemental strand, 3283292 - 3283024
Alignment:
Q  138 catgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaagga 237  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||  |||||| |||||||||  ||||||||| || ||||||||||||| ||    
T  3283292 catgaaatctcaccaattttgacggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaaga 3283193  T
Q  238 tgcgatcgtgagaagatgaagtttccggaat---cgcagaa---gcagaagctgcatc---atcagattcttcatcttcatcgatgtctgaat------c 322  Q
    ||| ||||||||| | |||||||||  ||||    ||||||   |||  | || ||||   | |||| || |||||||||||||   ||||||      |    
T  3283192 tgcaatcgtgagaggctgaagtttcaagaattggtgcagaaaccgcaagaacttcatcactaacagaatcgtcatcttcatcgagtactgaatcggaagc 3283093  T
Q  323 gaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
    | |||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||    
T  3283092 ggaagcggaagcatcatcatcttcatccctagggtatcgctctgataccatgttagtaatcaaggaatc 3283024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 16808576 - 16808658
Alignment:
Q  380 aatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 462  Q
    ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  16808576 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactcataga 16808658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 48941810 - 48941747
Alignment:
Q  407 atagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    |||||||||||||||| |||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  48941810 atagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcatt 48941747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 5926042 - 5926140
Alignment:
Q  136 cacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaa 234  Q
    |||||||||  || |||||||||||||| | ||||||||||| ||||||||||  |||| |||||||| || |  ||||||| ||||||||| ||||||    
T  5926042 cacatgaaaaatcaccaatcttgatggacattccatcaaattttggttcgattgaaggatttgaaaccagattgtttggagaatcgaaactgtcgaaaa 5926140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 470
Target Start/End: Original strand, 5924828 - 5924874
Alignment:
Q  424 agcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||    
T  5924828 agcaagcataagagtattcatataggagatactcatagaaactcatt 5924874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 23689560 - 23689500
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcata 433  Q
    ||||||||||| |||||||  ||||||| |  ||| |||||||||||||||||| ||||||    
T  23689560 tgttaagaatcgtggaatcgaagggagaaagatcacagatgtaagcaagatagctagcata 23689500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 5127 - 4901
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 136  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| | ||| || ||| ||||||||||||||||||||| | |  |  ||    
T  5127 tcaattcaggttcaagaacctccaatttctcatcttcttgcgaatcaacgaacatacaatcgtcttctttgacgatgttgcagcaaggattgatgattgc 5028  T
Q  137 acatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaagg 236  Q
     || |||||||| ||||| ||||||||||||||||| |||| ||||||||| | |||| ||||||||||| | || ||||| |||||| |||||||||||    
T  5027 gcaagaaatctcaccaattttgatggagaatccatcgaattttggttcgatcaaaggatttgaaaccggaatgatcggagaatcgaaaatgccgaaaagg 4928  T
Q  237 atgcgatcgtgagaagatgaagtttcc 263  Q
    ||  |||||||||||| |||| |||||    
T  4927 ataggatcgtgagaagttgaattttcc 4901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 4790 - 4720
Alignment:
Q  300 tcatcttcatcgatgtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgatac 370  Q
    |||||||||||||   |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  4790 tcatcttcatcgagtgctgaatcggaagcggaagcatcatcatcttcatccctagggtatcgctctgatac 4720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 28126366 - 28126494
Alignment:
Q  334 catcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcata 433  Q
    |||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||    
T  28126366 catcttcatcttcctccctagggtatcgctctgataccatgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcata 28126465  T
Q  434 agagtactcatgtgggagatactcataga 462  Q
    |||||||||||||||||||||||||||||    
T  28126466 agagtactcatgtgggagatactcataga 28126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 21632606 - 21632969
Alignment:
Q  17 gaaatcagattcgcaattcgtcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttg 116  Q
    ||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||  |||||| ||| || ||| ||||||||||||    
T  21632606 gaaatcagagtcgcgattcttcaattcaggttcaagaacttccaatttctcatcttcttgcgattcaatgaacacacaatcgtcttctttgacgatgttg 21632705  T
Q  117 cagcaaggagtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggag 216  Q
    |||||||||   || |   | || |||||||| ||||||||||| || ||||||||||||| ||||| ||||  | |  | ||||||||  | |||||||    
T  21632706 cagcaaggatcgacgattacgcaagaaatctcaccaatcttgat-gaaaatccatcaaattttggtttgattgaaaggttagaaaccggtatgattggag 21632804  T
Q  217 actcgaaactgccgaaaaggatgcgatcgtgagaagatgaagtttccggaatcgcagaa---gcagaagctgcatcatcagattcttcatcttcatcgat 313  Q
    | || |||||||||||||||| || ||| ||||||| |||||| |||  ||  ||||||   ||  || | ||||||||| ||||||||||||| |        
T  21632805 aatcaaaactgccgaaaaggacgcaatcttgagaagttgaagtatcctaaaatgcagaagttgcgaaaaccgcatcatcaaattcttcatcttcgt---- 21632900  T
Q  314 gtctgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatc 391  Q
             | ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  21632901 ---------ggaagcggaagcatcatcaacttcatccctagggtatcactctgataccatgttatgaatcatggaatc 21632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 20046486 - 20046584
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20046486 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 20046584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 28014264 - 28014362
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||| |||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28014264 tgttatgaatcatgaaatcatagggagaaagatcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattg 28014362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 44963403 - 44963305
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||    
T  44963403 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactcaaagaaattcattg 44963305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 28124585 - 28124667
Alignment:
Q  380 aatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 462  Q
    ||||||||||||||||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28124585 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcataga 28124667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 462
Target Start/End: Complemental strand, 4895817 - 4895735
Alignment:
Q  380 aatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 462  Q
    ||||||||||||||||||||| |  |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  4895817 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactcataga 4895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 373 - 470
Target Start/End: Original strand, 25471762 - 25471859
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||| |||||||||||||||| ||||| |  ||||||||||||| |||||||||||||||||| || ||| |||||||||||| |||||||||||||    
T  25471762 tgttatgaatcatggaatcataaggagaaagatcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcatt 25471859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 6686978 - 6687080
Alignment:
Q  132 agagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccga 231  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||   |||| |||||||| |  | |||| ||| |||||||| ||||    
T  6686978 agagcataagaaatctcaccaatcttgatggagaatccatcaaattctggttcgatggaaggatttgaaaccagtttgattgaagattcgaaactaccga 6687077  T
Q  232 aaa 234  Q
    |||    
T  6687078 aaa 6687080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 8405715 - 8405649
Alignment:
Q  405 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||| |||||||||| |||||||||||||||||| ||||| |||||||| || |||||||||||||    
T  8405715 tcatatatgtaagcaaaatagcaagcataagagtattcatgggggagataatcgtagaaactcattg 8405649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 29597963 - 29598059
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcat 469  Q
    ||||| |||||||||||||  ||||| | | |||||||   | ||||||| ||  |||||||||||| ||||||||||||||| |||||| ||||||    
T  29597963 tgttatgaatcatggaatcccagggataaaggtcatagtgatcagcaagaaagagagcataagagtattcatgtgggagatacccatagagactcat 29598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 9879503 - 9879552
Alignment:
Q  108 acgatgttgcagcaaggagtaacaagagcacatgaaatctccccaatctt 157  Q
    |||||||||| | ||| |||||||||||||||  ||||||||||||||||    
T  9879503 acgatgttgctgaaagaagtaacaagagcacaataaatctccccaatctt 9879552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 30224471 - 30224372
Alignment:
Q  372 atgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  30224471 atgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 30224372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 6428981 - 6428883
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  6428981 tgttaagaatcatggaatcataaggagagaagtcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattg 6428883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 5567665 - 5567568
Alignment:
Q  374 gttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  5567665 gttaaaaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 5567568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 3375424 - 3375511
Alignment:
Q  372 atgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcat 459  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  3375424 atgttaagaatcatggaatcatagggagaaaggtcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactcat 3375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 373 - 471
Target Start/End: Complemental strand, 25249246 - 25249148
Alignment:
Q  373 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  25249246 tgttaagaatcatgaaatcatagggagaaaagtcatatatgtaagcaagatagcaagcataagggtactcatgagggagatactcaaagtaactcattg 25249148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 36535856 - 36535922
Alignment:
Q  387 gaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 453  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36535856 gaatcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 36535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 31032038 - 31032092
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcatt 31032092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 19473728 - 19473674
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  19473728 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcatt 19473674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 19544653 - 19544599
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  19544653 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcatt 19544599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 19588043 - 19588097
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  19588043 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcatt 19588097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 470
Target Start/End: Original strand, 3379149 - 3379203
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  3379149 agcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcatt 3379203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 14939711 - 14939657
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||||||| |||||||||||| | |||||||| ||||||||||||    
T  14939711 agcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcatt 14939657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 29758361 - 29758262
Alignment:
Q  372 atgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||    
T  29758361 atgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattg 29758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 18739966 - 18739909
Alignment:
Q  317 tgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatg 374  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||    
T  18739966 tgaatcgaaagcggaagcatcaccatcttccttcctagtgtatcactctaataccatg 18739909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 454
Target Start/End: Original strand, 18612074 - 18612112
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagata 454  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagata 18612112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 17148670 - 17148710
Alignment:
Q  424 agcaagcataagagtactcatgtgggagatactcatagaaa 464  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  17148670 agcaaacataacagtactcatgtgggagatactcatagaaa 17148710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 8759115 - 8759153
Alignment:
Q  433 aagagtactcatgtgggagatactcatagaaactcattg 471  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  8759115 aagagtactcatgagggagatactcaaagaaactcattg 8759153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 33688592 - 33688440
Alignment:
Q  125 agtaacaagagcacatgaaatctccccaatcttgatggagaatccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaa 224  Q
    ||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||| | |||| | ||||||||||||||||||||    
T  33688592 agtaataagaacacatgaaatttccccaattttgatggagaatccatcaaattctggtttgattaaaggattagaaatcagagtaattggagactcgaaa 33688493  T
Q  225 ctgccgaaaaggatgcgatcgtgagaagatgaagtttccggaatcgcagaagc 277  Q
    ||||| ||||  ||| |||||||||||| ||||| ||||  ||||| ||||||    
T  33688492 ctgccaaaaacaatgggatcgtgagaagctgaaggttccttaatcggagaagc 33688440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 25076050 - 25076131
Alignment:
Q  317 tgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcataggga 398  Q
    |||||||||| | ||||||||| ||||||||||| |||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  25076050 tgaatcgaaatcagaagcatcaacatcttcctccataggttatctctctaataccatgttatgaatcatggaatcataggga 25076131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 25134019 - 25134100
Alignment:
Q  317 tgaatcgaaagcggaagcatcatcatcttcctccctagggtatcactctgataccatgttaagaatcatggaatcataggga 398  Q
    |||||||||| | ||||||||| ||||||||||| |||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  25134019 tgaatcgaaatcagaagcatcaacatcttcctccataggttatctctctaataccatgttatgaatcatggaatcataggga 25134100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 20012959 - 20013011
Alignment:
Q  418 caagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20012959 caagaaagcaagcataagagtactcatgtgggagatactcatagaaactcatt 20013011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 25075761 - 25075896
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 136  Q
    ||||||||||||| ||||  ||| |||||||||||||||| ||||||||  ||||| ||| || ||||||||||||||| || ||||||   |  |   |    
T  25075761 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgatgttacaacaaggatcgatgattac 25075860  T
Q  137 acatgaaatctccccaatcttgatggagaatccatc 172  Q
     || |||||||| |||||||||||||||||||||||    
T  25075861 gcaagaaatctcaccaatcttgatggagaatccatc 25075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 25133730 - 25133865
Alignment:
Q  37 tcaattcaggttcaagaatttccaatttctcatcttcttgcgaatcaacaaacacataattgttttcattgacgatgttgcagcaaggagtaacaagagc 136  Q
    ||||||||||||| ||||  ||| |||||||||||||||| ||||||||  ||||| ||| || ||||||||||||||| || ||||||   |  |   |    
T  25133730 tcaattcaggttctagaacctccgatttctcatcttcttgtgaatcaacccacacagaatcgtcttcattgacgatgttacaacaaggatcgatgattac 25133829  T
Q  137 acatgaaatctccccaatcttgatggagaatccatc 172  Q
     || |||||||| |||||||||||||||||||||||    
T  25133830 gcaagaaatctcaccaatcttgatggagaatccatc 25133865  T

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Target: scaffold0189 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 378 - 470
Target Start/End: Complemental strand, 19180 - 19088
Alignment:
Q  378 agaatcatggaatcatagggagagaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||    
T  19180 agaatcatggaatcatagggagaaaaatcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcatagaaactcatt 19088  T

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Target: scaffold0057 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 58982 - 58928
Alignment:
Q  416 agcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcatt 58928  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 39325 - 39287
Alignment:
Q  432 taagagtactcatgtgggagatactcatagaaactcatt 470  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  39325 taagagtactcatgtgggagatactcataaaaactcatt 39287  T

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