View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_29 (Length: 439)
Name: NF1614_low_29
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 41351859 - 41351433
Alignment:
| Q |
6 |
aacatatatggaccccatgatgatcaggttctgaaatatatgtcgccaactagggcatgtaaaagtccctcacttttatttaaataaaggaaggannnnn |
105 |
Q |
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| T |
41351859 |
aacatatatggaccccatgatgatcaggttctgaaatatatgtcgccaactagggcatgtaaaagtccctcacttttatttaaataaaggaaggaagaga |
41351760 |
T |
|
| Q |
106 |
nnnnnnnnnnnnnnncttaacaactattgcacttgcacattaatttgatatcc-ccaggcaactttggaatatacaagaaggcgacatagctatagaaag |
204 |
Q |
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| T |
41351759 |
atagagagagaga--cttaacaactattgcacttgcacattaatttgatatcctccaggcaactttggaatatacaagaaggcgacatagctatagaaag |
41351662 |
T |
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| Q |
205 |
cataagcatgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatcacttacattaccact |
304 |
Q |
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| T |
41351661 |
cataagcatgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatcacttacattaccact |
41351562 |
T |
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| Q |
305 |
catggctatggctgttggagtgaagttcctgacaaagctggtcagtcttcaaatcttctttttcattcataaactaaattaattcttattttaaaattag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41351561 |
catggctatggctgttggagtgaagttcctgacaaagctggtcagtcttcaaatcttctttttcattcataaactaaattaattcttattttaaaattag |
41351462 |
T |
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| Q |
405 |
cagattctctttccaccttgctgatgatg |
433 |
Q |
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| T |
41351461 |
cagattctctttccaccttgctgatgatg |
41351433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 5960670 - 5960601
Alignment:
| Q |
221 |
cattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5960670 |
cattcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatca |
5960601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 5921522 - 5921443
Alignment:
| Q |
211 |
catgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5921522 |
catgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatca |
5921443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 5949414 - 5949335
Alignment:
| Q |
211 |
catgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5949414 |
catgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatca |
5949335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 5984942 - 5984863
Alignment:
| Q |
211 |
catgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5984942 |
catgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatca |
5984863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 5843420 - 5843370
Alignment:
| Q |
240 |
agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5843420 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca |
5843370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 5850162 - 5850112
Alignment:
| Q |
240 |
agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
5850162 |
agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca |
5850112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 347
Target Start/End: Original strand, 2590584 - 2590719
Alignment:
| Q |
212 |
atgggtcagcattcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatcacttacattaccactcatggct |
311 |
Q |
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| T |
2590584 |
atgggtcaccattcatgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggtt |
2590683 |
T |
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| Q |
312 |
atggctgttggagtgaagttcctgacaaagctggtc |
347 |
Q |
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|||| || ||||||||||||||||| |||||||||| |
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| T |
2590684 |
atggttgctggagtgaagttcctgagaaagctggtc |
2590719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 42789186 - 42789120
Alignment:
| Q |
224 |
tcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca |
290 |
Q |
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| T |
42789186 |
tcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatca |
42789120 |
T |
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