View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_30 (Length: 431)
Name: NF1614_low_30
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_30 |
 | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 45845626 - 45846030
Alignment:
| Q |
17 |
aaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaac |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845626 |
aaaatgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaac |
45845725 |
T |
|
| Q |
117 |
ttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845726 |
ttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaa |
45845825 |
T |
|
| Q |
217 |
gatcatgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845826 |
aatcatgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaa |
45845925 |
T |
|
| Q |
317 |
aaaccaccccatgttttcttgtgtgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacac |
416 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45845926 |
aaaccaccccatgttttcttgtgcgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacac |
45846025 |
T |
|
| Q |
417 |
ctttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
45846026 |
ctttg |
45846030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 348
Target Start/End: Complemental strand, 2990611 - 2990296
Alignment:
| Q |
33 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaa |
132 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| |||||| | || || ||||| |
|
|
| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
|
| Q |
133 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcatac |
232 |
Q |
| |
|
||| |||| ||| | ||| ||||||||||| | |||||||| ||||| ||||| |||||| | ||| || ||||| | ||| ||||||||||| ||| |
|
|
| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
|
| Q |
233 |
caccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttt |
332 |
Q |
| |
|
||||||||||| || ||||| |||| || ||||| | |||||||| | ||| ||||||||| ||||||||| || |||| |||| |||||||| |
|
|
| T |
2990411 |
caccaccattcgagacaaaccgaaatgcagcttggaattgctaaattcaaaagcgatttccatcctttgaaacaagcagaggaaattccactccatgttt |
2990312 |
T |
|
| Q |
333 |
tcttgtgtgtgccaga |
348 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2990311 |
tcttgtgtgttccaga |
2990296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 28505699 - 28505852
Alignment:
| Q |
104 |
gaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaaca |
203 |
Q |
| |
|
||||||| || ||| | |||||||||||||| ||| | |||||| || |||||||| | |||||||| ||||||| |||||| ||||||| | ||| | |
|
|
| T |
28505699 |
gaaacaccaagactaagtgatgatggaaaaacataaaccaaagatgttgtttgaataagtattcccattgaagcaattgttgcttttggattaaccaaaa |
28505798 |
T |
|
| Q |
204 |
aaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
257 |
Q |
| |
|
||||| | || ||||||| ||||||||||||||||| || ||||| |||| |
|
|
| T |
28505799 |
gtccacacatcattatcatgaactcataccaccaccattcgagacaaaccgaaa |
28505852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 24490 - 24396
Alignment:
| Q |
18 |
aaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacacta |
112 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || ||||||||| |
|
|
| T |
24490 |
aaatgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgttgaaacacta |
24396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 24143 - 24088
Alignment:
| Q |
365 |
atcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacaccttt |
420 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
24143 |
atcaaagaagcaacaaggttgaaatttgtccataccccacttaaagcaactccttt |
24088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 51875145 - 51874980
Alignment:
| Q |
92 |
ccaactctagtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttg |
191 |
Q |
| |
|
||||||||||| ||||||| |||||| | || |||||||||| ||| | ||||||||| |||||||| | ||| ||||| |||| || ||||| ||| |
|
|
| T |
51875145 |
ccaactctagttgaaacaccaaaactaagagaagatggaaaaacataaaccaaagaagttgtttgaataagaatacccattgaagaaatggttgactttg |
51875046 |
T |
|
| Q |
192 |
gatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
257 |
Q |
| |
|
| || | ||| | ||||| || | ||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
51875045 |
ggttgaccaaaagtccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaa |
51874980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University