View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_31 (Length: 429)
Name: NF1614_low_31
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 411
Target Start/End: Complemental strand, 44145765 - 44145380
Alignment:
| Q |
23 |
tttactttgtagttctctaatcttcatacgagtaagacatgagttaaacaactctgcattttttattcctaggtgcaaaaaagtttaaccatcatatgct |
122 |
Q |
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| T |
44145765 |
tttactttgtagttctctaatcttcatacgtgtaagacatgagttaaacaactctgcattttttattccca--tgctaaaa-gcttaaccatcgtatgct |
44145669 |
T |
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| Q |
123 |
aagagcatctttaatccctttgaagttcaacaaattaaaagcattcccatttcattttggtttgttagcattgaaaatatgatggaaactactcttgatg |
222 |
Q |
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| T |
44145668 |
aagagcatctttaatccctttgaagttcaacaaattagaaacattcccatttcattatggtatgttggcattggaaacatgatggaaactactcttgatg |
44145569 |
T |
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| Q |
223 |
cacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctttggaaggaagtgtggagagcca |
322 |
Q |
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| T |
44145568 |
cccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctttggaaggaagtgtggagagcca |
44145469 |
T |
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| Q |
323 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctagcaagaaagggt |
411 |
Q |
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| T |
44145468 |
ctgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgactgaattaatctagcaagaaagggt |
44145380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 44156185 - 44156560
Alignment:
| Q |
1 |
ttgacttactttattaagggtgtttactttgtagttctctaatcttcatacgagtaagacatgagttaaacaactctgcattttttattcctaggtgcaa |
100 |
Q |
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| T |
44156185 |
ttgacttattttattaagagtgtttactatgtaattctctaatcttcatacgagtaagacatgagttaaacaactctgcattttttattccca--tgcta |
44156282 |
T |
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| Q |
101 |
aaaagtttaaccatcatatgctaagagcatctttaatccctttgaagttcaacaaattaaaagcattcccatttcattttggtttgttagcattgaaaat |
200 |
Q |
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||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||| |||||| ||| |
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| T |
44156283 |
aaa-gcttaaccatcgtatgctaagagcatctttaatccctttgaagttcaacaaattagaaacattcccatttcattatggtatgttggcattggaaac |
44156381 |
T |
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| Q |
201 |
atgatggaaactactcttgatgcacataccttctcttcacttgagagacactaagagcaaagatgctcctgaatcatctggaagaagaagccaagacctt |
300 |
Q |
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| T |
44156382 |
atgatggaaactactcttgatgcccataccatctcttctcctgagagacactaggagcgaagatgctctcgagtcatcctacagaagaagccaagacctt |
44156481 |
T |
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| Q |
301 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccga |
379 |
Q |
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| T |
44156482 |
tggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacataaatatattcccga |
44156560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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