View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_33 (Length: 420)
Name: NF1614_low_33
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 46750176 - 46750483
Alignment:
| Q |
11 |
attcttgaagtcactactttgtaatacgaatgtatactccatcatgcatgaaatcacnnnnnnnnnnnnn--aaggaatcatgcatgaaattactggtta |
108 |
Q |
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| T |
46750176 |
attcttgaagtcactactttgtaatacgaatgtatactccatcatgcatgaaatcactttttttttttttttaaggaatcatgcatgaaattactggtta |
46750275 |
T |
|
| Q |
109 |
ctacccatgatatttgagttcatcatgtaaccaaaatatgtatgacacaaaatgttctcttctaaacacaagaacacatactccacccnnnnnnnnaatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46750276 |
ctacccatgatatttgagttcatcatgtaaccaaaatatgtatgacacaaaatgttctcttctaaacacaagaacacatactccacccttttttttaatc |
46750375 |
T |
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| Q |
209 |
gtcatatttgaataaattttctgtctctacttagttgtcattttaaagtttaatataatattaattattgatttttcgattatatccttactcattttac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46750376 |
gtcatatttgaataaattttctgtctctacttagttgtcattttaaagtttaatataatattaattattgatttttcgattatatccttactcattttac |
46750475 |
T |
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| Q |
309 |
cgtagaga |
316 |
Q |
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|||||||| |
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| T |
46750476 |
cgtagaga |
46750483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 19603583 - 19603555
Alignment:
| Q |
249 |
ttttaaagtttaatataatattaattatt |
277 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
19603583 |
ttttaaagtttaatataatattaattatt |
19603555 |
T |
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