View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_34 (Length: 417)
Name: NF1614_low_34
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 43143085 - 43143490
Alignment:
| Q |
10 |
aagaaaatctaaatttacattaagcgagtaatagatagaataatgtgttgctcaagagatcatgcaaagatgtcagttgagagagtttaatagttcaacg |
109 |
Q |
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| T |
43143085 |
aagaaaatctaaatttacattaagcgagtaatagatagaataatgtgttgctcaagagatcatgcaaagatgtcagttgagagagtttaatagttcaacg |
43143184 |
T |
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| Q |
110 |
tttgaattccttcggnnnnnnnnnnnnnnng-gttcaacgtttgaatgttcttttggtgtgaattaggtattttaaagttgtattttgagtgctggattc |
208 |
Q |
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| T |
43143185 |
tttgaattccttaaaaaaaaaaaaaaaaaaaagttcaacgtttgaatgttcttttggtgtgaattaggtattttaaagttgtattttgagtgctggattc |
43143284 |
T |
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| Q |
209 |
atataggtaagttgcaagatannnnnnnaccatctcattcaaatgtttttgaatagttagatcatattaatannnnnnnnnngcttcttaagaataaaaa |
308 |
Q |
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| T |
43143285 |
atataggtaagttgcaagatatttttttaccatctcattcaaatgtttttgaatagttagatcatattaata--tattttttgcttcttaagaataaaaa |
43143382 |
T |
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| Q |
309 |
accagcgtttgaattgaaagtaagaggtggtacaattgacgaggccaataataactcgtagcctgcaggagggaagtggcgaccatatcctctagagtgt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43143383 |
accagcgtttgaattgaaagtaagaggtggtacaattgatgaggccaataataactcgtagcctgcaggagggaagtggcgaccatatcctctagaatgt |
43143482 |
T |
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| Q |
409 |
tggtgggg |
416 |
Q |
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| T |
43143483 |
tggtgggg |
43143490 |
T |
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