View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_35 (Length: 415)

Name: NF1614_low_35
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_35
NF1614_low_35
[»] chr4 (9 HSPs)
chr4 (101-415)||(24225663-24225974)
chr4 (210-415)||(54147992-54148197)
chr4 (89-180)||(24225617-24225708)
chr4 (301-415)||(16871458-16871573)
chr4 (101-180)||(16871050-16871132)
chr4 (101-170)||(16871086-16871156)
chr4 (130-180)||(16871045-16871097)
chr4 (105-180)||(16871125-16871208)
chr4 (132-180)||(16870899-16870947)
[»] scaffold0499 (1 HSPs)
scaffold0499 (304-414)||(7045-7155)
[»] chr5 (14 HSPs)
chr5 (301-415)||(24137404-24137519)
chr5 (113-184)||(27314808-27314879)
chr5 (105-173)||(24137194-24137258)
chr5 (122-180)||(24137177-24137235)
chr5 (130-179)||(9511927-9511976)
chr5 (123-180)||(11335334-11335391)
chr5 (301-361)||(9512269-9512329)
chr5 (108-177)||(9512013-9512082)
chr5 (328-407)||(11320618-11320698)
chr5 (101-156)||(11335324-11335379)
chr5 (353-404)||(27315112-27315163)
chr5 (130-179)||(24137122-24137171)
chr5 (101-145)||(9511932-9511976)
chr5 (210-254)||(9512202-9512246)
[»] chr6 (17 HSPs)
chr6 (304-414)||(13098053-13098163)
chr6 (105-177)||(22860818-22860893)
chr6 (301-415)||(28063188-28063303)
chr6 (210-288)||(28063350-28063428)
chr6 (101-177)||(9291150-9291227)
chr6 (105-180)||(9291111-9291188)
chr6 (117-180)||(22860760-22860825)
chr6 (105-180)||(22860927-22861003)
chr6 (349-415)||(18984354-18984420)
chr6 (306-415)||(21862377-21862487)
chr6 (305-415)||(33424169-33424279)
chr6 (210-260)||(33424299-33424349)
chr6 (101-180)||(22860778-22860861)
chr6 (330-415)||(9290829-9290915)
chr6 (134-180)||(9291181-9291228)
chr6 (117-180)||(22860906-22860968)
chr6 (132-165)||(18984142-18984175)
[»] chr1 (20 HSPs)
chr1 (304-415)||(11993440-11993550)
chr1 (304-415)||(2071719-2071832)
chr1 (316-415)||(2075249-2075350)
chr1 (101-188)||(11993223-11993309)
chr1 (99-177)||(12177171-12177249)
chr1 (323-415)||(3774505-3774598)
chr1 (102-177)||(15629862-15629938)
chr1 (105-180)||(15629822-15629900)
chr1 (101-159)||(12177155-12177213)
chr1 (329-406)||(15629549-15629627)
chr1 (101-180)||(3775108-3775183)
chr1 (117-180)||(9168209-9168273)
chr1 (101-183)||(12177095-12177179)
chr1 (125-188)||(370460-370523)
chr1 (307-358)||(370565-370616)
chr1 (337-415)||(10354204-10354282)
chr1 (101-149)||(3775073-3775119)
chr1 (104-164)||(9168191-9168252)
chr1 (130-170)||(15629903-15629944)
chr1 (114-170)||(9168295-9168351)
[»] chr7 (30 HSPs)
chr7 (301-415)||(3902050-3902164)
chr7 (301-415)||(3889558-3889672)
chr7 (101-165)||(44338572-44338636)
chr7 (301-415)||(46963253-46963368)
chr7 (217-287)||(21814171-21814241)
chr7 (301-415)||(24486665-24486778)
chr7 (112-188)||(24486927-24487003)
chr7 (301-415)||(44338857-44338972)
chr7 (313-403)||(17921400-17921490)
chr7 (117-179)||(21813953-21814016)
chr7 (301-357)||(3889301-3889357)
chr7 (304-415)||(3890011-3890122)
chr7 (304-415)||(15614439-15614551)
chr7 (100-162)||(6532147-6532207)
chr7 (132-177)||(26403127-26403172)
chr7 (132-180)||(46963689-46963737)
chr7 (99-180)||(6532114-6532191)
chr7 (101-173)||(21813972-21814040)
chr7 (133-180)||(44338570-44338617)
chr7 (117-180)||(44338647-44338710)
chr7 (101-180)||(46963648-46963734)
chr7 (210-284)||(24486829-24486902)
chr7 (101-139)||(24486942-24486980)
chr7 (114-180)||(24486969-24487035)
chr7 (373-415)||(26403382-26403424)
chr7 (304-357)||(3901796-3901849)
chr7 (99-155)||(8574427-8574481)
chr7 (148-177)||(44338644-44338673)
chr7 (99-180)||(11828470-11828553)
chr7 (130-180)||(46963534-46963588)
[»] chr8 (15 HSPs)
chr8 (327-415)||(5616763-5616851)
chr8 (101-165)||(20242249-20242313)
chr8 (101-165)||(20250847-20250911)
chr8 (301-415)||(20242534-20242649)
chr8 (301-415)||(20250511-20250626)
chr8 (133-180)||(20242247-20242294)
chr8 (117-180)||(20242324-20242387)
chr8 (117-180)||(20250773-20250836)
chr8 (133-180)||(20250866-20250913)
chr8 (324-398)||(16578989-16579062)
chr8 (127-161)||(16579198-16579232)
chr8 (127-161)||(16583943-16583977)
chr8 (148-177)||(20242321-20242350)
chr8 (148-177)||(20250810-20250839)
chr8 (129-165)||(16579280-16579316)
[»] chr3 (6 HSPs)
chr3 (327-415)||(22821048-22821136)
chr3 (217-287)||(16462711-16462781)
chr3 (130-180)||(42530811-42530861)
chr3 (101-156)||(42530816-42530871)
chr3 (121-174)||(42530879-42530933)
chr3 (350-415)||(34338082-34338147)
[»] chr2 (17 HSPs)
chr2 (101-180)||(38583938-38584017)
chr2 (301-415)||(8986734-8986849)
chr2 (117-180)||(38583971-38584035)
chr2 (99-187)||(29409336-29409426)
chr2 (301-415)||(38583679-38583794)
chr2 (301-400)||(20593611-20593709)
chr2 (301-415)||(32290962-32291076)
chr2 (105-180)||(32290694-32290771)
chr2 (101-154)||(38583930-38583982)
chr2 (101-180)||(38584006-38584091)
chr2 (124-180)||(38584045-38584102)
chr2 (132-180)||(8986368-8986416)
chr2 (130-180)||(8986514-8986568)
chr2 (307-415)||(42633125-42633233)
chr2 (301-415)||(1172950-1173065)
chr2 (105-176)||(32290800-32290868)
chr2 (101-178)||(8986371-8986455)
[»] scaffold0025 (1 HSPs)
scaffold0025 (327-396)||(154697-154766)
[»] scaffold0007 (1 HSPs)
scaffold0007 (132-165)||(14716-14749)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 101 - 415
Target Start/End: Original strand, 24225663 - 24225974
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttgnnnnnnnnnnnn 200  Q
    ||||||||||||||| |||| |||| |  | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||                 
T  24225663 ttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctcccccttttgattcttctgtttggtt----ctctctctc 24225758  T
Q  201 nnnnnnnattggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgttt-ggatggttactctctttggctgattggtggttt 299  Q
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||     
T  24225759 tctctctattggttgtttctccctaccgattcttgtttggtttaatttgaaatggttcttatgttttggatggttactctctttggttgattggtggttc 24225858  T
Q  300 ctgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24225859 ctgctgctcttcattgattatgttatcagctgatttggtttattttcgaggttaatttgtaatgagcttcaaacttagtaagctttaacttcaggggtag 24225958  T
Q  400 tgttagaagtttatat 415  Q
    |||| |||||||||||    
T  24225959 tgttcgaagtttatat 24225974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 54147992 - 54148197
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggctgattggtggtttctgctgctct 309  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||| |  ||||||  || ||||||||||||||||| |||||  |||||||||    
T  54147992 tggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggataatttctctctttggctgattgatggttcttgctgctct 54148091  T
Q  310 tcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagt 409  Q
    ||||| |||||  ||  |||| |||||||||||||||| |||||||||||||  ||||| || |||||||||||| ||||| ||||||||||||| ||||    
T  54148092 tcattcgttatactacaagctaatttggtttatttttggggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaaaagt 54148191  T
Q  410 ttatat 415  Q
    ||||||    
T  54148192 ttatat 54148197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 24225617 - 24225708
Alignment:
Q  89 catttctcattattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||| |||||||||||| |||| ||||||| || ||||||||||||||||||||||||||| | || |||||||||||||||    
T  24225617 catttctcattattcattcttctgattcattgcacttctcccctttttgattcttctgattcattgcactttttcctcttttgattcttctg 24225708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 16871458 - 16871573
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || |  |||||||||||||||||||||   |||||||||||||  || || || |||||||||||| ||||| ||||||||    
T  16871458 tgctgctctccattggttttgctgacagctgatttggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtag 16871557  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  16871558 tgttagaactttatat 16871573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 16871050 - 16871132
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctccc-ttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  16871050 ttgattcttctgattgcattgcacttctccccccttttgattcttctgattgcattgcacttctcccacttttggttcttctg 16871132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 16871086 - 16871156
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctccccctttt 170  Q
    |||||||||||||||| |||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||    
T  16871086 ttgattcttctgattgcattgcacttctcccacttttggttcttctgattgattgcacttctccccctttt 16871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 16871045 - 16871097
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttct-cccccttttgattcttctg 180  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  16871045 cccttttgattcttctgattgcattgcacttctccccccttttgattcttctg 16871097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 16871125 - 16871208
Alignment:
Q  105 ttcttctgattgattgtacttctctccctttt--gattcttctgatt-----cattgcacttctc-ccccttttgattcttctg 180  Q
    |||||||||||||||| ||||||| |||||||  ||||| |||||||     ||||||||||||| ||||||||||||||||||    
T  16871125 ttcttctgattgattgcacttctcccccttttttgattcgtctgattgattgcattgcacttctctccccttttgattcttctg 16871208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 16870899 - 16870947
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||| ||| ||| ||||||||    
T  16870899 cttttgattcttctgattgattgcatttctccacctattggttcttctg 16870947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 414
Target Start/End: Complemental strand, 7155 - 7045
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||| ||||| |||||  || |||||||||||||||||||  |||||||||||||| |||||| || |||||||||||||||||| ||||||||||||    
T  7155 tgctctccattgattatgccatgagctgatttggtttattttcaaggttaatttgtaacgagcttaaaccttagtaagctttagcttaaggggtagtgtt 7056  T
Q  404 agaagtttata 414  Q
    |||||||||||    
T  7055 agaagtttata 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 24137404 - 24137519
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || |||||||||||  ||||| || |||||||||||||||||| ||||||||    
T  24137404 tgctgctcttcattggttctgctagcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaagctttagcttgaggggtag 24137503  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  24137504 tgttagaactttatat 24137519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 27314808 - 27314879
Alignment:
Q  113 attgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttg 184  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||| |||||    
T  27314808 attgattatacttctctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttg 27314879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 24137194 - 24137258
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgat 173  Q
    |||||||||||||||||| ||||| |||||||||||||||||    |||||||||||||| ||||||||    
T  24137194 ttcttctgattgattgtatttctcccccttttgattcttctg----attgcacttctcccacttttgat 24137258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 24137177 - 24137235
Alignment:
Q  122 acttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||| |||||||| ||||||||||| |||| | |||||||||||||||||||||||    
T  24137177 acttctcccccttttggttcttctgattgattgtatttctcccccttttgattcttctg 24137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 9511927 - 9511976
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  9511927 cccttttgattcttctgattgattgcacttctccccatattgattcttct 9511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 11335391 - 11335334
Alignment:
Q  123 cttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||    
T  11335391 cttctcccccttttgattcttttgattgattacacttctccccctattgattcttctg 11335334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 9512269 - 9512329
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaa 361  Q
    ||||||||||||||||||||| ||  |||| |||||||||||||| | |||||||||||||    
T  9512269 tgctgctcttcattggttatgctacgagctaatttggtttattttcggggttaatttgtaa 9512329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 9512013 - 9512082
Alignment:
Q  108 ttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||| |||||||    ||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  9512013 ttctgattgattgcacttctccttgttttggttcttctcattgattgcatttctcccccttttgattctt 9512082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 11320698 - 11320618
Alignment:
Q  328 gctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaa 407  Q
    ||||||||| |||||||||  || |||||||||||  ||||| || |||||||||||| ||||| | ||||||||||||||    
T  11320698 gctgatttgatttatttttttgggttaatttgtaacaagcttaaagcttagtaagcttcagcttgatgggtagtgttagaa 11320618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 11335379 - 11335324
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgca 156  Q
    ||||||||| |||||||||  ||||||| |||| ||||||||||||||| ||||||    
T  11335379 ttgattcttttgattgattacacttctccccctattgattcttctgattgattgca 11335324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 27315112 - 27315163
Alignment:
Q  353 aatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||||||||  ||||| ||||||||||||||||| ||| |||||||||||||    
T  27315112 aatttgtaacaagcttaaaacttagtaagctttaccttgaggggtagtgtta 27315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 24137122 - 24137171
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||||||| ||||||| ||  ||||||||||||||||||||| |||||||    
T  24137122 cccttttggttcttctaatagattgcacttctcccccttttggttcttct 24137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9511932 - 9511976
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttct 145  Q
    |||||||||||||||||||| ||||||| || | |||||||||||    
T  9511932 ttgattcttctgattgattgcacttctccccatattgattcttct 9511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 9512202 - 9512246
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatg 254  Q
    |||||| |||| ||||||||||||||||||||||| || ||||||    
T  9512202 tggttgcttcttcctaccgattcttgtttggtttagttcgaaatg 9512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 13098053 - 13098163
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||||||||| |||||  || |||||||||||||||||||   ||||||||||||| |||||| || |||||||||| ||||||| ||||||||||||    
T  13098053 tgctcttcattgattatgccatgagctgatttggtttattttcagggttaatttgtaacgagcttaaaccttagtaagccttagcttaaggggtagtgtt 13098152  T
Q  404 agaagtttata 414  Q
    |||||||||||    
T  13098153 agaagtttata 13098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 22860818 - 22860893
Alignment:
Q  105 ttcttctgattgattgtacttctctccc--ttttgattcttctgattc-attgcacttctcccccttttgattctt 177  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22860818 ttcttctgattgattgcacttctctcccctttttgattcttctgattccattgcacttctccccctattgattctt 22860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 28063303 - 28063188
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||   |||||||||||||  ||||| || |||||||| ||| | ||| ||||| ||    
T  28063303 tgctgctctctattggttatgctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaaacttcatcttgaggggaag 28063204  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  28063203 tgttagaactttatat 28063188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 28063428 - 28063350
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggctg 288  Q
    |||||| |||||||||| ||| ||||||||||||| ||||||||||||||| || ||||||| || |||||||||||||    
T  28063428 tggttgcttctccctactgatgcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggctg 28063350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 9291227 - 9291150
Alignment:
Q  101 ttgattcttctgattgattgtacttctctccc-ttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    |||||||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||| | ||||||||||    
T  9291227 ttgattcttctgattgattgcacttctccccccttttggttcttctgattgattgcacttctccctcctttgattctt 9291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 9291188 - 9291111
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctccccc-ttttgattcttctg 180  Q
    |||||||||||||||| ||||||| | | |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  9291188 ttcttctgattgattgcacttctccctcctttgattcttttgattgcattgcacttctccccctttttgattcttctg 9291111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22860760 - 22860825
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttct-cccccttttgattcttctg 180  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  22860760 attgcacttctctcccttttgattcttctgattgcattgcacttctccccccttttggttcttctg 22860825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 22860927 - 22861003
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||| ||||||||| | ||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||||||||    
T  22860927 ttcttccgattgattgcatttctcccccttttggttcttctgattgcattgcatttctcccccttttggttcttctg 22861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 18984354 - 18984420
Alignment:
Q  349 ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||||||||  ||||| || |||||||||||||||||| |||||| ||||||||| |||||||    
T  18984354 ggttaatttgtaacaagcttaaaccttagtaagctttagcttgaggggtggtgttagaattttatat 18984420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 21862377 - 21862487
Alignment:
Q  306 ctcttcattggttatgttatcagctgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||| |||||||| || || ||||||||||||||||| |||  ||||||||||||||  ||||| ||  |||||| |||| ||||| ||||| |||||||    
T  21862377 ctctccattggttttgctaacagctgatttggtttatatttctaggttaatttgtaacaagcttaaagtttagtatgcttcagcttgaggggaagtgtta 21862476  T
Q  405 gaagtttatat 415  Q
    ||| |||||||    
T  21862477 gaactttatat 21862487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 415
Target Start/End: Complemental strand, 33424279 - 33424169
Alignment:
Q  305 gctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||||||||||||| || ||  |||| ||||||||||||||   | |||||||||||  | ||| || |||||||||||| | ||| |||||||||||||    
T  33424279 gctcttcattggttgtgctacgagctaatttggtttattttctggattaatttgtaacaaacttaaagcttagtaagcttcaacttgaggggtagtgtta 33424180  T
Q  405 gaagtttatat 415  Q
    ||| |||||||    
T  33424179 gaactttatat 33424169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 33424349 - 33424299
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttctt 260  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  33424349 tggttgcttctccttaccgattcttgtttggtttagtttgaaatggttctt 33424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 22860778 - 22860861
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctccc-ttttgattcttctgattcattgcact--tctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| ||||||| ||| ||||| ||||||||||| ||||||||  ||||||| ||||||||||||||    
T  22860778 ttgattcttctgattgcattgcacttctccccccttttggttcttctgattgattgcacttctctcccctttttgattcttctg 22860861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 9290915 - 9290829
Alignment:
Q  330 tgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||||||||||||  ||||||||||||||  ||||| || ||| |||| ||| ||||||||| ||| |||||||| |||||||    
T  9290915 tgatttggtttatttttttaggttaatttgtaacaagcttaaagcttggtaaacttcagcttcaggagtaatgttagaactttatat 9290829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 9291228 - 9291181
Alignment:
Q  134 tttgattcttctgattcattgcacttctc-ccccttttgattcttctg 180  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  9291228 tttgattcttctgattgattgcacttctccccccttttggttcttctg 9291181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22860906 - 22860968
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||| |||||| |||| |||||| |||||||||||||| ||||||||    
T  22860906 attgcacttctc-cccttttggttcttccgattgattgcatttctcccccttttggttcttctg 22860968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 18984142 - 18984175
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||| |||||||||||||||    
T  18984142 cttttgattcttctgattgattgcacttctcccc 18984175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 11993440 - 11993550
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||||||||||||||| |||||||||||||||||||||||    |||||||| |||  ||||| || |||| ||||||||| ||| ||||||||||||    
T  11993440 tgctcttcattggttatgctatcagctgatttggtttattttctttgttaattt-taacaagcttaaatcttaataagctttaacttgaggggtagtgtt 11993538  T
Q  404 agaagtttatat 415  Q
    ||||||||||||    
T  11993539 agaagtttatat 11993550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 2071832 - 2071719
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggtt-aatttgtaatgagcttcaaa-cttagtaagctttagcttcaggggtagtg 401  Q
    |||||| |||| |||||| ||||| ||||||| ||||||||||  |||| |||||||||  ||||| ||  |||||||||||||||||| ||||||||||    
T  2071832 tgctctccatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtg 2071733  T
Q  402 ttagaagtttatat 415  Q
    ||| ||||||||||    
T  2071732 ttacaagtttatat 2071719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 2075350 - 2075249
Alignment:
Q  316 gttatgttatcagctgatttggtttatttttgaggtt-aatttgtaatgagcttcaaa-cttagtaagctttagcttcaggggtagtgttagaagtttat 413  Q
    |||||| ||||| ||||||| ||||||||||  |||| |||||||||  ||||| ||  |||||||||||||||||| ||||||||||||| ||||||||    
T  2075350 gttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtgttacaagtttat 2075251  T
Q  414 at 415  Q
    ||    
T  2075250 at 2075249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 11993223 - 11993309
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttct-cccccttttgattcttctgtttggttg 188  Q
    ||||||||||| ||| |||| |||||||||  | ||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  11993223 ttgattcttctaattaattggacttctctc--tattgattcttctgattgatttcacttctccccccttttgattcttctctttggttg 11993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 12177249 - 12177171
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||  |||||||||  ||||||| ||||||||||| |||||||| |||||||||||   |||||||||||||    
T  12177249 tattgattctcttgattgatttcacttctcccccttttgattattctgattgattgcacttcttttccttttgattctt 12177171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 3774598 - 3774505
Alignment:
Q  323 tatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||| |||| ||||||||||||  || |||||||||||  ||| | || |||||||||||||| ||| ||||||| ||||||||||||||||    
T  3774598 tatcagttgatatggtttatttttctgggttaatttgtaacaagcataaagcttagtaagctttaacttgaggggtaatgttagaagtttatat 3774505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 15629938 - 15629862
Alignment:
Q  102 tgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||| |||| ||||||| |||||||  ||||| ||||| |||||||||||||| | ||||||||||    
T  15629938 tgattcttctgattgcattgcacttctccccctttttgttcttttgattgattgcacttctccctcctttgattctt 15629862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 15629900 - 15629822
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctccccc--ttttgattcttctg 180  Q
    ||||| |||||||||| ||||||| | | |||||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  15629900 ttcttttgattgattgcacttctccctcctttgattcttttgattgcattgcacttctcccccttttttgattcttctg 15629822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 12177213 - 12177155
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcactt 159  Q
    |||||| ||||||||||||| |||||| | ||||||||||||| ||||| |||||||||    
T  12177213 ttgattattctgattgattgcacttcttttccttttgattcttatgattgattgcactt 12177155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 15629627 - 15629549
Alignment:
Q  329 ctgatttggtttatttttgag-gttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttaga 406  Q
    ||||||| ||||||||||  | ||||||||||||  ||||| || |||||||||||| ||||| |||||||||||||||    
T  15629627 ctgatttagtttatttttctgagttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaga 15629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 3775183 - 3775108
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||| ||||||||||  ||||||  ||||||||||||| ||||| |||||  |||||||| ||||||||||||||    
T  3775183 ttgattcttttgattgattg--cttctcctccttttgattcttttgattgattgc--ttctccccattttgattcttctg 3775108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 9168273 - 9168209
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||| | ||||||| |||||||| ||| |||||||||||||| ||||||||||||||||    
T  9168273 attgcacttcccccccttttcattcttcttattgcattgcacttctcctccttttgattcttctg 9168209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 12177179 - 12177095
Alignment:
Q  101 ttgattcttctgattgattgtacttctctccct-tttgattcttctgattcattgcacttc-tcccccttttgattcttctgttt 183  Q
    ||||||||| |||||||||| |||| | ||||  ||| |||||||||||| |||||||||| |||| ||||||||||| ||||||    
T  12177179 ttgattcttatgattgattgcacttatgtccccattttattcttctgattgattgcacttcttcccacttttgattctcctgttt 12177095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 370460 - 370523
Alignment:
Q  125 tctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttg 188  Q
    ||||| |||||| |||||| ||||| ||||||||||| | |||||||||| || ||||||||||    
T  370460 tctcttcctttttattcttttgattgattgcacttcttctccttttgattattatgtttggttg 370523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 370565 - 370616
Alignment:
Q  307 tcttcattggttatgttatcagctgatttggtttatttttgaggttaatttg 358  Q
    ||||||||||||||| |||  |||||||||||||||||||  ||||||||||    
T  370565 tcttcattggttatgctataggctgatttggtttatttttcgggttaatttg 370616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 10354204 - 10354282
Alignment:
Q  337 gtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||  ||||||||| |||  | ||| || |||||||||||||||||| | | |||||||||||| |||||||    
T  10354204 gtttattttttgggttaatttctaacaaacttaaagcttagtaagctttagcttgaagagtagtgttagaactttatat 10354282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 3775119 - 3775073
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt 149  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  3775119 ttgattcttctgatcgattgt--ttctctctcttttgattcttctgatt 3775073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 9168252 - 9168191
Alignment:
Q  104 attcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctccc 164  Q
    |||||||| |||| |||| |||||||  ||||||||||||||||||  ||||||||||||||    
T  9168252 attcttcttattgcattgcacttctcctccttttgattcttctgatcgattgcacttctccc 9168191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 15629944 - 15629903
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccctttt 170  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  15629944 cccttatgattcttctgattgcattgcacttctccccctttt 15629903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 9168351 - 9168295
Alignment:
Q  114 ttgattgtacttctctcccttttgattcttctgattcattgcacttctccccctttt 170  Q
    ||||||| ||||||| |||| ||  ||||||||| ||||||||||||||||| ||||    
T  9168351 ttgattgcacttctccccctattatttcttctgactcattgcacttctccccttttt 9168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 3902050 - 3902164
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||  |||||||||||||  || || || ||||| |||||||||||| | ||| |||    
T  3902050 tgctgctcttcattggttttgatatcagctgatctggtttattttttcggttaatttgtaacaagtttaaagcttagcaagctttagcttaaagggaagt 3902149  T
Q  401 gttagaagtttatat 415  Q
    ||||||| |||||||    
T  3902150 gttagaactttatat 3902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 3889558 - 3889672
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    |||||||||||||||||| || |||| | |||||||||||||||||  |||||||||||||| || || || ||||| || ||||||||| | ||| |||    
T  3889558 tgctgctcttcattggttttgatatcggttgatttggtttattttttgggttaatttgtaataagtttaaagcttagcaaactttagcttaaagggaagt 3889657  T
Q  401 gttagaagtttatat 415  Q
    ||||||| |||||||    
T  3889658 gttagaactttatat 3889672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 44338572 - 44338636
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  44338572 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 44338636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 46963368 - 46963253
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || |  |||||||||||||||||||||   |||||||||||||  || || || |||||||||||| ||||| ||||||||    
T  46963368 tgctgctctccattggttttgctgacagctgatttggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtag 46963269  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  46963268 tgttagaactttatat 46963253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 21814171 - 21814241
Alignment:
Q  217 ttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggct 287  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| || ||||||| || ||||||||||||    
T  21814171 ttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 21814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 24486778 - 24486665
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    ||||||| ||||||||||||| ||| |  | ||||||||||||||||  || |||||||||  | ||| || |||||||||||||| ||||| |||||||    
T  24486778 tgctgctattcattggttatgctataacttcatttggtttatttttggagt-aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagt 24486680  T
Q  401 gttagaagtttatat 415  Q
    |||||||||||||||    
T  24486679 gttagaagtttatat 24486665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 24487003 - 24486927
Alignment:
Q  112 gattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttg 188  Q
    ||||||||| |||| ||| ||||||||||||||||||| |||| |||||| |||||||||||  |||||||||||||    
T  24487003 gattgattgcacttgtcttccttttgattcttctgattgattgtacttctaccccttttgatgattctgtttggttg 24486927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 44338857 - 44338972
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  44338857 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 44338956  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  44338957 tgtttgaactttatat 44338972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 17921490 - 17921400
Alignment:
Q  313 ttggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||| ||||||||||| ||||| ||||||||   |||||||||||||  ||||| || |||||||||||||||||| ||||||| ||||    
T  17921490 ttggttctgttatcagctaatttgttttattttctgggttaatttgtaacaagcttaaagcttagtaagctttagcttgaggggtactgtt 17921400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 21813953 - 21814016
Alignment:
Q  117 attgtacttctctccctttt-gattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||    
T  21813953 attgcacttctctccctttttgattcttctgattcattgtatttctcccccttttgattgttct 21814016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 3889301 - 3889357
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaattt 357  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  3889301 tgctactcttcattggttttggtatcagctgatttggtttattttttgggttaattt 3889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 3890011 - 3890122
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag-tgt 402  Q
    ||||||||||| ||| || |||||  |||||||||||||||||  |||||||||||||  || || || |||||||||||||||||| | | |||| |||    
T  3890011 tgctcttcattagttttgatatcatttgatttggtttattttt-tggttaatttgtaacaagtttaaagcttagtaagctttagcttaaagtgtagttgt 3890109  T
Q  403 tagaagtttatat 415  Q
    ||||| |||||||    
T  3890110 tagaactttatat 3890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 15614551 - 15614439
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgt 402  Q
    |||||| |||||||| || || || | ||||||||||||||||  || ||||||| |||  ||||| ||||||||||||||| ||||  |||||||||||    
T  15614551 tgctctccattggttttgctaacaacagatttggtttatttttctgggttaatttttaacaagcttaaaacttagtaagcttcagctcgaggggtagtgt 15614452  T
Q  403 tagaagtttatat 415  Q
     |||| |||||||    
T  15614451 aagaactttatat 15614439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 6532147 - 6532207
Alignment:
Q  100 attgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctc 162  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||||||||| | ||||||||||    
T  6532147 attgattcttctgattgattgcacttctc--cctattgattcttctgattgactgcacttctc 6532207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 26403127 - 26403172
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||    
T  26403127 cttttgattattctgatttatagcacttctcccccttttgattctt 26403172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 46963737 - 46963689
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||    
T  46963737 cttttgattcttctgattgattgcatttctccccctattggttcttctg 46963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 6532114 - 6532191
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||| ||||||| |||||||| ||||||| || ||  ||||||||||||| |||||||||||  |||| ||||||||||||    
T  6532114 tattggttcttctcattgattgaacttctccccatt--gattcttctgattgattgcacttct--ccctattgattcttctg 6532191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 21813972 - 21814040
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgat 173  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||    | |||||||||||||| ||||||||    
T  21813972 ttgattcttctgattcattgtatttctcccccttttgattgttc----taattgcacttctcccacttttgat 21814040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 44338570 - 44338617
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  44338570 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 44338617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 44338647 - 44338710
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  44338647 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 44338710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 46963734 - 46963648
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt------cattgcacttctcc-cccttttgattcttctg 180  Q
    |||||||||||||||||||| | ||||| |||| ||| |||||||||||      |||||||||||||| | |||||||||||||||    
T  46963734 ttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctccactcttttgattcttctg 46963648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 24486902 - 24486829
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttg 284  Q
    ||||||||| |||||| |||| |||||||||||||  || ||||||||||| |  |||||||||| |||||||||    
T  24486902 tggttgtttttccctatcgat-cttgtttggtttagctttaaatggttcttcttattggatggtttctctctttg 24486829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 24486980 - 24486942
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgat 139  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  24486980 ttgattcttctgattgattgtacttctaccccttttgat 24486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24487035 - 24486969
Alignment:
Q  114 ttgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||| ||||||||| ||||| ||||| | |||| ||||||||| ||  ||||||||||||||||    
T  24487035 ttgattgcacttctctcacttttaattctaccgattgattgcacttgtcttccttttgattcttctg 24486969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 26403382 - 26403424
Alignment:
Q  373 cttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  26403382 cttagtaaactttagcttgaggggtagtgttagaactttatat 26403424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 3901796 - 3901849
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaattt 357  Q
    ||||||||||||||| || ||||| |||||||||||||||| |  |||||||||    
T  3901796 tgctcttcattggttttgatatcacctgatttggtttatttcttgggttaattt 3901849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8574427 - 8574481
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgc 155  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||| || |||||    
T  8574427 tattgattcttctaattgattg--cttctctcccttttgattattctgtttgattgc 8574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 44338644 - 44338673
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  44338644 ttcattgcacttctcccccttttgattctt 44338673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 11828553 - 11828470
Alignment:
Q  99 tattgattcttctgattgattgtacttctc-tcccttttgattcttctgattcattg---cacttctcccccttttgattcttctg 180  Q
    |||||||||||||| |||||||  |||||| |||||||||||||||||| || ||||    |||||| |||||| |||||||||||    
T  11828553 tattgattcttctggttgattg--cttctcctcccttttgattcttctggttgattggattacttcttccccttatgattcttctg 11828470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 46963588 - 46963534
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccc---ttttgattcttctg 180  Q
    ||||||||||||||| |||| |||||||||||||||||   ||||||||||||||    
T  46963588 cccttttgattcttccgattgcattgcacttctccccccttttttgattcttctg 46963534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 5616763 - 5616851
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||||||||||  |||||||||||||  || || || ||||||| |||||||||| |||||||||||||||| |||||||    
T  5616763 agctgatttggtttattttttgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatat 5616851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 20242249 - 20242313
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  20242249 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 20242313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 20250911 - 20250847
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  20250911 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 20250847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 20242534 - 20242649
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  20242534 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 20242633  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  20242634 tgtttgaactttatat 20242649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 20250626 - 20250511
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  20250626 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 20250527  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  20250526 tgtttgaactttatat 20250511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 20242247 - 20242294
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  20242247 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 20242294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 20242324 - 20242387
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  20242324 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 20242387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 20250836 - 20250773
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  20250836 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 20250773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 20250913 - 20250866
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  20250913 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 20250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 16579062 - 16578989
Alignment:
Q  324 atcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggta 398  Q
    |||| |||||||||||||||||| ||||||||||||||  || || || |||| ||||||||| ||| |||||||    
T  16579062 atcaactgatttggtttattttt-aggttaatttgtaacaagtttaaagcttattaagctttaacttgaggggta 16578989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 16579232 - 16579198
Alignment:
Q  127 tctcccttttgattcttctgattcattgcacttct 161  Q
    ||||||||||||||||||||||| |||||||||||    
T  16579232 tctcccttttgattcttctgatttattgcacttct 16579198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 16583977 - 16583943
Alignment:
Q  127 tctcccttttgattcttctgattcattgcacttct 161  Q
    ||||||||||||||||||||||| |||||||||||    
T  16583977 tctcccttttgattcttctgatttattgcacttct 16583943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 20242321 - 20242350
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  20242321 ttcattgcacttctcccccttttgattctt 20242350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 20250839 - 20250810
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  20250839 ttcattgcacttctcccccttttgattctt 20250810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 16579316 - 16579280
Alignment:
Q  129 tcccttttgattcttctgattcattgcacttctcccc 165  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  16579316 tcccttttgattcttcttattgattgcacttctcccc 16579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 22821136 - 22821048
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||||||||||  |||||||||||||  || || || ||||||| |||||||||| |||||||||||||||| |||||||    
T  22821136 agctgatttggtttattttttgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatat 22821048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 16462711 - 16462781
Alignment:
Q  217 ttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggct 287  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| || ||||||| || ||||||||||||    
T  16462711 ttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 16462781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 42530811 - 42530861
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42530811 cccttttgattcttctgattgattgcacttcttccccttttgattcttctg 42530861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 42530816 - 42530871
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgca 156  Q
    |||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||    
T  42530816 ttgattcttctgattgattgcacttcttccccttttgattcttctgattgattgca 42530871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 42530879 - 42530933
Alignment:
Q  121 tacttctctcccttttgattcttctgattcattgcacttct-cccccttttgatt 174  Q
    |||||||| | |||||| ||||||||||| ||||||||||| |||||||||||||    
T  42530879 tacttctccctcttttggttcttctgattgattgcacttctccccccttttgatt 42530933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 34338082 - 34338147
Alignment:
Q  350 gttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||  || || || |||||||||||||||||| ||||||||  ||| ||||||||||    
T  34338082 gttaatttgtaacaagtttaaagcttagtaagctttagcttgaggggtagctttaaaagtttatat 34338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 38584017 - 38583938
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  38584017 ttgattcttctgattgcattgcatttctcgcccttttgattcttctgattgattgcacttctccccc-tttgattcttctg 38583938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 8986734 - 8986849
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||| | || |  |||||||||||||||||||||   |||||||||||||  ||||| || |||||||||||| ||||| ||||||||    
T  8986734 tgctgctctccattgggtttgctgacagctgatttggtttatttttcttggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtag 8986833  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  8986834 tgttagaactttatat 8986849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 38584035 - 38583971
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  38584035 attgcacttctcccccttttgattcttctgattgcattgcatttctcgcccttttgattcttctg 38583971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 29409426 - 29409336
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgatt-----cattgcacttctcccccttttgattcttctgtttggtt 187  Q
    |||||||||||||||||||||| || |||| |||| |||||||||||||||     ||||||||||||  |||| |||||||||||||||||||    
T  29409426 tattgattcttctgattgattgcacgtctc-ccctgttgattcttctgattgattgcattgcacttct--ccctattgattcttctgtttggtt 29409336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 38583794 - 38583679
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgagg--ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggta 398  Q
    |||||||||| ||||||| |  || |||||||||||||||||||||   |  |||||||||||  || || || |||||||||||| ||||| |||||||    
T  38583794 tgctgctcttaattggttcttctaccagctgatttggtttattttttttggattaatttgtaacaag-ttaaagcttagtaagcttcagcttgaggggta 38583696  T
Q  399 gtgttagaagtttatat 415  Q
    ||||||||| |||||||    
T  38583695 gtgttagaactttatat 38583679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 400
Target Start/End: Complemental strand, 20593709 - 20593611
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    ||||||||||| ||| || |  ||||||||||||||||||||||||  | |||||||||||  ||||| ||||||||||| ||| | ||| |||||||||    
T  20593709 tgctgctcttcgttgattctactatcagctgatttggtttattttttggattaatttgtaacaagctt-aaacttagtaaacttcaactttaggggtagt 20593611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 32290962 - 32291076
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| || ||||| || || |||||||||  ||||||||||  ||||||||| ||||  ||||| || |||||||||||| ||||| ||||||||    
T  32290962 tgctgctctccaatggtt-tgctaacagctgattcagtttatttttctaggttaattggtaacaagcttaaagcttagtaagcttcagcttgaggggtag 32291060  T
Q  400 tgttagaagtttatat 415  Q
    |||||||  |||||||    
T  32291061 tgttagatctttatat 32291076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 32290694 - 32290771
Alignment:
Q  105 ttcttctgattg-attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||| |||| ||||||| |  ||||| | ||||||||| |||||||||||||||||||||| ||||||||    
T  32290694 ttcttctgattgcattgcacttctcccatttttggtccttctgattgcattgcacttctcccccttttggttcttctg 32290771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 38583982 - 38583930
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattg 154  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  38583982 ttgattcttctgattgattgcacttctcccccttt-gattcttctgattgattg 38583930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 38584091 - 38584006
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgatt-----cattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||| |||| || | ||||||| ||||||||||| |||||| |     |||||||||||||||||||||||||||||||    
T  38584091 ttgattcttctaattgcatcgcacttctcccccttttgatttttctgagtgattgcattgcacttctcccccttttgattcttctg 38584006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 38584102 - 38584045
Alignment:
Q  124 ttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  38584102 ttctcccccttttgattcttctaattgcatcgcacttctcccccttttgatttttctg 38584045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 8986368 - 8986416
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||    
T  8986368 cttttgattcttctgattgattgcatttctccccctattggttcttctg 8986416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 8986514 - 8986568
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccc---ttttgattcttctg 180  Q
    |||||||||||||||||||| |||||||||||||||||   ||||||||||||||    
T  8986514 cccttttgattcttctgattgcattgcacttctccccccttttttgattcttctg 8986568  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 42633233 - 42633125
Alignment:
Q  307 tcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttaga 406  Q
    |||||||| || ||| ||| ||||||||| |||||||||   ||||||||| |||| | ||  ||  ||||||||||||| ||| ||| ||||||||| |    
T  42633233 tcttcattagtcatgctattagctgatttagtttattttcagggttaatttataataaactaaaagtttagtaagctttaacttgaggtgtagtgttaaa 42633134  T
Q  407 agtttatat 415  Q
    |||||||||    
T  42633133 agtttatat 42633125  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 1173065 - 1172950
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || || |||||||||||||| ||||||   |||||||||||||  | ||| || ||  |||||||| ||||| || |||||    
T  1173065 tgctgctctccattggttttgctaacagctgatttggttgatttttctgggttaatttgtaacaaacttaaagctccgtaagcttcagcttgagaggtag 1172966  T
Q  400 tgttagaagtttatat 415  Q
    | |||||| |||||||    
T  1172965 tattagaactttatat 1172950  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 32290800 - 32290868
Alignment:
Q  105 ttcttctgattgattgtacttctct-cccttttgattcttctgattcattgcacttctcccccttttgattct 176  Q
    |||||||||||||||| | |||||| |||||||||||||||||    |||||||||||||| |||||| ||||    
T  32290800 ttcttctgattgattgcatttctctccccttttgattcttctg----attgcacttctcccacttttgcttct 32290868  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 8986371 - 8986455
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt------cattgcacttctcc-cccttttgattcttc 178  Q
    |||||||||||||||||||| | ||||| |||| ||| |||||||||||      |||||||||||||| | |||||||||||||    
T  8986371 ttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctccactcttttgattcttc 8986455  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 154766 - 154697
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcagggg 396  Q
    |||| |||||||||||||||  |||||||||||||  | ||| ||||||||||| ||||| ||| |||||    
T  154766 agctaatttggtttatttttagggttaatttgtaacaaacttaaaacttagtaatctttatcttaagggg 154697  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 14749 - 14716
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||| |||||||||||||||    
T  14749 cttttgattcttctgattgattgcacttctcccc 14716  T

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