View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_37 (Length: 410)
Name: NF1614_low_37
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 46167086 - 46167468
Alignment:
| Q |
11 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46167086 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggcgcttgtcgtcg |
46167185 |
T |
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| Q |
111 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167186 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
46167285 |
T |
|
| Q |
211 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167286 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
46167385 |
T |
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| Q |
311 |
acagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167386 |
acagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatat |
46167468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 393
Target Start/End: Original strand, 46160794 - 46160952
Alignment:
| Q |
235 |
tctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctg |
334 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46160794 |
tctatgtaactttactgtcaatgtgacatcctaacacaggcgggtccaagaatttgtcttggcaaggagtttgtatacagacagatgaagatattttctg |
46160893 |
T |
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| Q |
335 |
cagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatat |
393 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
46160894 |
cagttctgttaggtagtcacaacttcaaactagcagaccaaaatagattggtgaaatat |
46160952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 46160224 - 46160340
Alignment:
| Q |
11 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || | |
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| T |
46160224 |
cagagagatggcttgatgaaaatggaaattttcagagagaaagcccttttaagttcacagcctttcaggtatgaacaacttaattaggcgctt---gtag |
46160320 |
T |
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| Q |
111 |
cataatcgcttatcatatac |
130 |
Q |
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|||||||||||||||||||| |
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| T |
46160321 |
cataatcgcttatcatatac |
46160340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 46182598 - 46182716
Alignment:
| Q |
275 |
cgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagacca |
374 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||| |
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| T |
46182598 |
cgggtccaagagtttgccttggcaagaagtttgcatacagacatataaagatattttctgcagttctattaggtagccacaactataaactagcagacca |
46182697 |
T |
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| Q |
375 |
aaataaattggtgaaatat |
393 |
Q |
| |
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||||||||||||||||||| |
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| T |
46182698 |
aaataaattggtgaaatat |
46182716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 26516212 - 26516256
Alignment:
| Q |
110 |
gcataatcgcttatcatatacgtgcttctgtataagcaatttcta |
154 |
Q |
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|||||| ||||||||||||| |||||| ||||||||| ||||||| |
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| T |
26516212 |
gcataagcgcttatcatataagtgcttatgtataagctatttcta |
26516256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 28283593 - 28283561
Alignment:
| Q |
196 |
tattttcataagctctttcaaacagtctcacaa |
228 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
28283593 |
tattttcataagttctttcaaacagtctcacaa |
28283561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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