View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_38 (Length: 405)

Name: NF1614_low_38
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_38
NF1614_low_38
[»] chr6 (26 HSPs)
chr6 (52-401)||(1191788-1192142)
chr6 (72-312)||(1178462-1178710)
chr6 (1-44)||(9107390-9107433)
chr6 (1-47)||(1191720-1191766)
chr6 (1-44)||(8776993-8777036)
chr6 (1-44)||(16766693-16766736)
chr6 (1-44)||(7977850-7977893)
chr6 (1-44)||(12696320-12696363)
chr6 (1-44)||(17841609-17841652)
chr6 (1-44)||(34595130-34595173)
chr6 (4-41)||(25010225-25010262)
chr6 (1-41)||(5970128-5970168)
chr6 (4-44)||(7801179-7801219)
chr6 (1-60)||(16833290-16833347)
chr6 (1-44)||(1681754-1681797)
chr6 (1-44)||(7938112-7938155)
chr6 (1-44)||(10770694-10770737)
chr6 (1-44)||(10842528-10842571)
chr6 (1-44)||(19040348-19040391)
chr6 (1-44)||(31959155-31959198)
chr6 (2-44)||(853880-853922)
chr6 (7-44)||(426540-426577)
chr6 (1-49)||(3209372-3209421)
chr6 (7-44)||(33001315-33001352)
chr6 (12-44)||(12868706-12868738)
chr6 (1-33)||(31384927-31384959)
[»] chr8 (23 HSPs)
chr8 (3-44)||(29510326-29510367)
chr8 (1-60)||(4673445-4673502)
chr8 (5-44)||(13436988-13437027)
chr8 (5-44)||(22651972-22652011)
chr8 (1-40)||(25566841-25566880)
chr8 (1-44)||(36450774-36450817)
chr8 (1-43)||(41831960-41832002)
chr8 (1-44)||(15816149-15816192)
chr8 (1-44)||(22595990-22596033)
chr8 (1-44)||(30271311-30271354)
chr8 (2-41)||(41838144-41838183)
chr8 (1-43)||(18407716-18407758)
chr8 (2-44)||(27101511-27101553)
chr8 (7-44)||(4298912-4298949)
chr8 (1-42)||(8342970-8343011)
chr8 (1-42)||(8343314-8343355)
chr8 (11-44)||(24196627-24196660)
chr8 (3-44)||(25192369-25192410)
chr8 (1-41)||(2572076-2572116)
chr8 (1-33)||(4948659-4948691)
chr8 (12-44)||(5813588-5813620)
chr8 (1-41)||(34897084-34897124)
chr8 (7-39)||(35519833-35519865)
[»] scaffold0652 (1 HSPs)
scaffold0652 (1-44)||(482-525)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-44)||(20168-20211)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-44)||(51807-51850)
[»] chr7 (17 HSPs)
chr7 (1-44)||(24339638-24339681)
chr7 (1-44)||(25481898-25481941)
chr7 (3-42)||(3991322-3991361)
chr7 (2-37)||(5409857-5409892)
chr7 (7-42)||(11061102-11061137)
chr7 (1-44)||(13770687-13770730)
chr7 (1-44)||(18215206-18215249)
chr7 (1-36)||(26033481-26033516)
chr7 (1-44)||(29787389-29787432)
chr7 (1-44)||(32308116-32308159)
chr7 (5-44)||(35861960-35861999)
chr7 (5-43)||(7438703-7438741)
chr7 (1-42)||(8234144-8234185)
chr7 (3-40)||(9778500-9778537)
chr7 (3-40)||(11665462-11665499)
chr7 (16-44)||(24105674-24105702)
chr7 (1-41)||(43027489-43027529)
[»] chr3 (29 HSPs)
chr3 (1-44)||(4987311-4987354)
chr3 (1-44)||(14979177-14979220)
chr3 (1-44)||(21479114-21479157)
chr3 (1-41)||(3164045-3164085)
chr3 (1-44)||(10954948-10954991)
chr3 (1-40)||(26508110-26508149)
chr3 (1-44)||(28917997-28918040)
chr3 (1-44)||(34910313-34910356)
chr3 (5-44)||(40052328-40052367)
chr3 (1-40)||(51206373-51206412)
chr3 (1-42)||(7928448-7928489)
chr3 (3-40)||(21257008-21257045)
chr3 (1-40)||(1509539-1509578)
chr3 (1-44)||(10268506-10268549)
chr3 (1-44)||(14209109-14209152)
chr3 (1-44)||(15796314-15796357)
chr3 (1-69)||(25948907-25948979)
chr3 (1-44)||(26492225-26492268)
chr3 (1-44)||(28812511-28812554)
chr3 (1-44)||(34185143-34185186)
chr3 (1-44)||(55401071-55401114)
chr3 (1-43)||(35994758-35994799)
chr3 (5-43)||(49651810-49651848)
chr3 (12-44)||(3865587-3865619)
chr3 (12-44)||(10318065-10318097)
chr3 (1-44)||(14747557-14747601)
chr3 (5-60)||(14829672-14829724)
chr3 (12-44)||(14832095-14832127)
chr3 (1-41)||(23870579-23870619)
[»] chr1 (30 HSPs)
chr1 (1-44)||(113295-113338)
chr1 (1-60)||(5898286-5898343)
chr1 (2-42)||(23738676-23738716)
chr1 (1-44)||(398785-398828)
chr1 (1-40)||(1486729-1486768)
chr1 (1-44)||(12443480-12443523)
chr1 (1-48)||(31015035-31015082)
chr1 (1-40)||(42359469-42359508)
chr1 (1-42)||(31672915-31672956)
chr1 (11-44)||(40917747-40917780)
chr1 (1-41)||(16297303-16297343)
chr1 (1-68)||(22515907-22515972)
chr1 (5-41)||(38078685-38078721)
chr1 (5-44)||(1262880-1262919)
chr1 (1-44)||(2896141-2896184)
chr1 (1-44)||(22881636-22881679)
chr1 (1-40)||(24577206-24577245)
chr1 (1-44)||(36878457-36878500)
chr1 (1-44)||(37598828-37598870)
chr1 (1-44)||(46348403-46348446)
chr1 (4-42)||(1705015-1705053)
chr1 (4-34)||(23705489-23705519)
chr1 (1-42)||(1864900-1864941)
chr1 (7-44)||(9103636-9103673)
chr1 (1-42)||(17754309-17754350)
chr1 (7-44)||(18556482-18556519)
chr1 (1-42)||(21378576-21378617)
chr1 (1-42)||(23652997-23653038)
chr1 (1-42)||(40258953-40258994)
chr1 (12-40)||(17778549-17778577)
[»] chr5 (20 HSPs)
chr5 (2-68)||(7677677-7677743)
chr5 (1-43)||(21191076-21191118)
chr5 (1-44)||(6247618-6247661)
chr5 (1-44)||(14674265-14674308)
chr5 (1-44)||(21576765-21576808)
chr5 (5-44)||(31084319-31084358)
chr5 (1-40)||(39698541-39698580)
chr5 (1-42)||(37328864-37328905)
chr5 (1-42)||(42893358-42893399)
chr5 (1-41)||(13287419-13287459)
chr5 (5-44)||(17177047-17177086)
chr5 (1-44)||(19552563-19552606)
chr5 (1-44)||(21522746-21522789)
chr5 (1-44)||(21533312-21533355)
chr5 (1-43)||(3966500-3966542)
chr5 (2-44)||(19579697-19579739)
chr5 (1-42)||(41633733-41633774)
chr5 (5-49)||(22611761-22611805)
chr5 (5-60)||(41995453-41995506)
chr5 (1-41)||(43001799-43001839)
[»] chr4 (17 HSPs)
chr4 (3-44)||(23293008-23293049)
chr4 (1-43)||(3947786-3947828)
chr4 (1-43)||(21945500-21945542)
chr4 (1-44)||(49431021-49431065)
chr4 (1-44)||(11596372-11596415)
chr4 (2-41)||(11651155-11651194)
chr4 (5-44)||(12895140-12895179)
chr4 (1-40)||(28964268-28964307)
chr4 (1-44)||(50280877-50280920)
chr4 (1-40)||(54580043-54580082)
chr4 (1-39)||(29205445-29205483)
chr4 (1-42)||(2361995-2362036)
chr4 (1-42)||(8423738-8423779)
chr4 (1-42)||(38847032-38847073)
chr4 (1-60)||(19482650-19482707)
chr4 (1-44)||(30298942-30298986)
chr4 (1-44)||(30327810-30327854)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-49)||(33383-33431)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-44)||(14526-14569)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-44)||(46678-46721)
[»] chr2 (15 HSPs)
chr2 (1-44)||(21374719-21374762)
chr2 (1-44)||(28677905-28677948)
chr2 (2-44)||(24894385-24894427)
chr2 (1-42)||(30717550-30717591)
chr2 (12-44)||(38117190-38117222)
chr2 (1-40)||(2438739-2438778)
chr2 (1-44)||(21616758-21616801)
chr2 (1-44)||(21782838-21782881)
chr2 (1-44)||(30404870-30404913)
chr2 (1-44)||(37419739-37419782)
chr2 (5-44)||(37558973-37559012)
chr2 (1-43)||(37411264-37411306)
chr2 (1-49)||(11223883-11223931)
chr2 (1-44)||(19536417-19536461)
chr2 (1-41)||(20539694-20539734)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-44)||(241590-241633)
[»] scaffold0306 (1 HSPs)
scaffold0306 (2-44)||(13396-13438)
[»] scaffold0152 (1 HSPs)
scaffold0152 (2-44)||(21889-21931)
[»] scaffold0053 (1 HSPs)
scaffold0053 (14-44)||(8794-8824)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-43)||(130479-130521)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-44)||(71719-71764)
[»] scaffold1528 (1 HSPs)
scaffold1528 (1-42)||(1033-1074)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-49)||(8001-8049)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-41)||(70277-70317)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-44)||(178838-178882)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 52 - 401
Target Start/End: Original strand, 1191788 - 1192142
Alignment:
Q  52 gtgtctgtgcttcatagtattatattctatcaatatcaatgagtgaatattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaa 151  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1191788 gtgtccgtgcttcatagtattatattctatcaatatcaatgagtgaatattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaa 1191887  T
Q  152 catttacacgttgacaccgatct-----tgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcgaacattgacatg 246  Q
    |||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  1191888 catttacacgttgacaccgatctaatcttgagaaaattacataaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcggacattaacatg 1191987  T
Q  247 tgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctctctatttctttcggtataaaatttcagctcgatct 346  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1191988 tgttgtacaccagaacacaccgtggatcataagtgccggttctatatcaagctattacacttctctctatttctttcagtataaaatttcagctcgatct 1192087  T
Q  347 cattgttgtgtacctatgatatcaatcagcaagcaacaagcctttcatctcactc 401  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1192088 cattgttgtgtacctatgatatcaattagcaagcaacaagcctttcatctcactc 1192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 312
Target Start/End: Original strand, 1178462 - 1178710
Alignment:
Q  72 tatattctatcaatatcaatgag----tgaa-tattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaacatttacacgttgac 166  Q
    |||||||||||||||||||||||    |||  ||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  1178462 tatattctatcaatatcaatgagagcttgaggtattaat-agtattgccttccctctcccaaagaaagaagcacaaacatacaaacacttacacgttgac 1178560  T
Q  167 ac-----cgatcttgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcgaacattgacatgtgttgtacaccagaa 261  Q
    ||     | |||||||||||||||| |||||||||||||  || | ||||  || |  || ||||| |   |  |||||||||||||| ||||||| |||    
T  1178561 actgatacaatcttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagtgtcaggaccagacattgacatgtgtcgtacaccggaa 1178660  T
Q  262 cacaccatggatcataagtgccggttctatatcaagctattacacttctct 312  Q
    |||||||| ||||||||| | ||||| |||| ||||||||||| |||||||    
T  1178661 cacaccat-gatcataaggggcggttttataacaagctattacgcttctct 1178710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9107390 - 9107433
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9107390 acactgaattttgtgattttttcaaattattagctgtgtcggcg 9107433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1191720 - 1191766
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgt 47  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  1191720 acactgaattttgtgaatttttcaaattattagctgtgtcggcgcgt 1191766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8776993 - 8777036
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  8776993 acactgaattttgtgattttttcaaattattagttgtgtcggcg 8777036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16766736 - 16766693
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  16766736 acactgaattatgtgattttttcaaattattagctgtgtcggcg 16766693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7977850 - 7977893
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  7977850 acactgaattatgtaattttttcaaattattagctgtgtcggcg 7977893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12696363 - 12696320
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  12696363 acactgaattatgtaattttttcaaattattagctgtgtcggcg 12696320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17841609 - 17841652
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  17841609 acactaaattatgtgattttttcaaattattagctgtgtcggcg 17841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34595173 - 34595130
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  34595173 acactgaattatgtgattttttcaaattattagttgtgtcggcg 34595130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 25010225 - 25010262
Alignment:
Q  4 ctgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25010225 ctgaattatgtgattttttcaaattattagctgtgtcg 25010262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5970128 - 5970168
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  5970128 acactgaattatgtgattttttcaaattattaactgtgtcg 5970168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 7801179 - 7801219
Alignment:
Q  4 ctgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  7801179 ctgaattatgtgattttttcaaattattagttgtgtcggcg 7801219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16833347 - 16833290
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||||||| | |||||||||||||||||||||| |||||||  |||| ||||||||||||    
T  16833347 acactgaagtatgtgattttttcaaattattagttgtgtcg--gcgtgtcagtgtctgtg 16833290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1681797 - 1681754
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||    
T  1681797 acactgaattacgtgattttttcaaattattagttgtgtcggcg 1681754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7938155 - 7938112
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| | |||||||||||||||||||||||||||||||    
T  7938155 acactaaattatatgattttttcaaattattagctgtgtcggcg 7938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10770694 - 10770737
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  10770694 acactgaattatgtgattttttcaaattattagttgtgttggcg 10770737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10842571 - 10842528
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| ||||||||||||||||||||||| |||||||||    
T  10842571 acactaaattatgtgattttttcaaattattagcggtgtcggcg 10842528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19040391 - 19040348
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  19040391 acactgaattatgtgattttctcaaattattagcggtgtcggcg 19040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31959198 - 31959155
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||    
T  31959198 acactgcattatgtgattttttcaaattattagctgtgacggcg 31959155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 853880 - 853922
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| |||| |||||||||||||||||||||| ||||||||||    
T  853880 cacttaattatgtgattttttcaaattattagttgtgtcggcg 853922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 426540 - 426577
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  426540 aattatgtgattttttcaaattattaactgtgtcggcg 426577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3209421 - 3209372
Alignment:
Q  1 acactgaattttgtgatttttt-caaattattagctgtgtcggcgcgtct 49  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||| ||||    
T  3209421 acactaaattatgtgatttttttcaaattattagctgtgtcggcgtgtct 3209372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 33001315 - 33001352
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  33001315 aattatgtgattttttcaaattattagcagtgtcggcg 33001352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 12868706 - 12868738
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||| |||||||||||    
T  12868706 tgtgattttttcaaattattaactgtgtcggcg 12868738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31384959 - 31384927
Alignment:
Q  1 acactgaattttgtgattttttcaaattattag 33  Q
    |||||||||| ||||||||||||||||||||||    
T  31384959 acactgaattatgtgattttttcaaattattag 31384927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 29510326 - 29510367
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29510326 actgaattttgtgattttttcaaattattagctgtgtcggcg 29510367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4673445 - 4673502
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| ||||||||||||    
T  4673445 acactgaattttatgattttttcaaattattatctgtgtcg--gcgtgtcagtgtctgtg 4673502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 13436988 - 13437027
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  13436988 tgaattatgtgattttttcaaattattagctgtgtcggcg 13437027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 22652011 - 22651972
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  22652011 tgaattatgtgattttttcaaattattagctgtgtcggcg 22651972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25566880 - 25566841
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  25566880 acactgaattatgtgattttttcaaattattagctgtgtc 25566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36450774 - 36450817
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  36450774 acactgaattctgtgattttttcaaattattagttgtgtcggcg 36450817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41831960 - 41832002
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  41831960 acactgaattatgtgattttttcaaattattaactgtgtcggc 41832002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15816149 - 15816192
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  15816149 acactaaattatgtgattttttcaaattattagttgtgtcggcg 15816192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22596033 - 22595990
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||    
T  22596033 acactgaattatgttatttttttaaattattagctgtgtcggcg 22595990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30271311 - 30271354
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||    
T  30271311 acactgcattatgtgattttttcaaatgattagctgtgtcggcg 30271354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 41838144 - 41838183
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  41838144 cactgaattatgtgatttttttaaattattagctgtgtcg 41838183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18407758 - 18407716
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| |||||||||||  |||||||||||||||||||    
T  18407758 acactgaattatgtgatttttttgaattattagctgtgtcggc 18407716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 27101553 - 27101511
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| |||| ||||||||||||||||||||||| |||||||||    
T  27101553 cactaaattatgtgattttttcaaattattagcggtgtcggcg 27101511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 4298912 - 4298949
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  4298912 aattatgtgattttttcaaattattaactgtgtcggcg 4298949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8343011 - 8342970
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||| |||| |||||||||||||||||||||||| ||||||    
T  8343011 acactaaattatgtgattttttcaaattattagctatgtcgg 8342970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8343355 - 8343314
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||| |||| |||||||||||||||||||||||| ||||||    
T  8343355 acactaaattatgtgattttttcaaattattagctatgtcgg 8343314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 24196627 - 24196660
Alignment:
Q  11 ttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||| ||||||||||    
T  24196627 ttgtgattttttcaaattattagttgtgtcggcg 24196660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 25192369 - 25192410
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||| ||| | |||||||||||||||||||||||||||    
T  25192369 actgaattatgtcactttttcaaattattagctgtgtcggcg 25192410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2572076 - 2572116
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    ||||| |||| |||||||||||||||||||||| |||||||    
T  2572076 acactaaattatgtgattttttcaaattattaggtgtgtcg 2572116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4948691 - 4948659
Alignment:
Q  1 acactgaattttgtgattttttcaaattattag 33  Q
    |||||||||| ||||||||||||||||||||||    
T  4948691 acactgaattatgtgattttttcaaattattag 4948659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 5813620 - 5813588
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||||||||||||||||||||||||||    
T  5813620 tgtgactttttcaaattattagctgtgtcggcg 5813588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34897124 - 34897084
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||||||||| ||||||||||||| ||||||    
T  34897124 acactgaattatgtgattttctcaaattattagcggtgtcg 34897084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 35519833 - 35519865
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgt 39  Q
    |||| ||||||||||||||||||||||||||||    
T  35519833 aattatgtgattttttcaaattattagctgtgt 35519865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 482 - 525
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  482 acactgaattttgtgattttttcaaattattagcagtgtcggcg 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20211 - 20168
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  20211 acactgaattatgtgattttttcaaattattagctgtgtcggcg 20168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51850 - 51807
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  51850 acactgaattatgtgattttttcaaattattagctgtgtcggcg 51807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24339681 - 24339638
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  24339681 acactgaattatgtgattttttcaaattattagctgtgtcggcg 24339638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25481941 - 25481898
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  25481941 acactgaattatgtgattttttcaaattattagctgtgtcggcg 25481898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 3991361 - 3991322
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  3991361 actgaattatgtgattttttcaaattattagttgtgtcgg 3991322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 5409857 - 5409892
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgt 37  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5409857 cactgaattatgtgattttttcaaattattagctgt 5409892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 11061102 - 11061137
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||| |||||||||||||||||||||||||||||||    
T  11061102 aattatgtgattttttcaaattattagctgtgtcgg 11061137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13770730 - 13770687
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||    
T  13770730 acactgaattatgtaatttttttaaattattagctgtgtcggcg 13770687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18215206 - 18215249
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||    
T  18215206 acactgcattatgtgattttttcaaattattagctgcgtcggcg 18215249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26033481 - 26033516
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctg 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  26033481 acactgaattatgtgattttttcaaattattagctg 26033516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29787389 - 29787432
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  29787389 acactgaattatgtgattttctcaaattattagcggtgtcggcg 29787432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32308159 - 32308116
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  32308159 acactgaattatgtgattttctcaaattattagcggtgtcggcg 32308116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 35861999 - 35861960
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  35861999 tgaattatgtgattttttcaaattattagttgtgtcggcg 35861960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 7438741 - 7438703
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  7438741 tgaattatgtgattttttcaaattattaactgtgtcggc 7438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8234185 - 8234144
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  8234185 acactgaattatgttattttttcaaattattagttgtgtcgg 8234144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 9778537 - 9778500
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  9778537 actgaattatgtgattttttcaaattatcagctgtgtc 9778500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 11665462 - 11665499
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  11665462 actgaattatgtgattttttcaaattattagttgtgtc 11665499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 24105702 - 24105674
Alignment:
Q  16 attttttcaaattattagctgtgtcggcg 44  Q
    |||||||||||||||||||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcg 24105674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43027489 - 43027529
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  43027489 acactgcattatgtgattttttcaaattattagctgggtcg 43027529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4987311 - 4987354
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  4987311 acactgaattatgtgattttttcaaattattagctgtgtcggcg 4987354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14979220 - 14979177
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  14979220 acactgaattatgtgattttttcaaattattagctgtgtcggcg 14979177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21479157 - 21479114
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  21479157 acactgaattgtgtgattttttcaaattattagctgtgtcggcg 21479114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3164045 - 3164085
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  3164045 acactgaattatgtgattttttcaaattattagctgtgtcg 3164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10954991 - 10954948
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  10954991 acactgaattatgtgattttttcaaattattagttgtgtcggcg 10954948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26508149 - 26508110
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  26508149 acactgaattatgtgattttttcaaattattagctgtgtc 26508110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28918040 - 28917997
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  28918040 acactgaattatgtgattttttcaaattattagctatgtcggcg 28917997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34910356 - 34910313
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  34910356 acactgaattatgtgattttttcaaattattagttgtgtcggcg 34910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 40052367 - 40052328
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  40052367 tgaattatgtgattttttcaaattattagctgtgtcggcg 40052328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51206373 - 51206412
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  51206373 acactgaattatgtgattttttcaaattattagctgtgtc 51206412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7928489 - 7928448
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  7928489 acactgaattatgtgattttttcaaattattagcggtgtcgg 7928448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 21257008 - 21257045
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||| |||||||||||||||||||||||||||||    
T  21257008 actgaattatgtgattttttcaaattattagctgtgtc 21257045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1509578 - 1509539
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  1509578 acactaaattatgtgattttttcaaattattagctgtgtc 1509539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10268506 - 10268549
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  10268506 acactaaattatgtgattttttcaaattattaactgtgtcggcg 10268549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14209152 - 14209109
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||    
T  14209152 acactgaattatgtgattttttaaaattattagttgtgtcggcg 14209109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15796314 - 15796357
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| | ||||||||||||||||||| |||||||||||    
T  15796314 acactgaattatatgattttttcaaattattaactgtgtcggcg 15796357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25948907 - 25948979
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtc----tcagtgtctgtgcttcatagt 69  Q
    |||||||||| ||||||||||||||||||||||| || |||||  |||    || ||||||||||||||||||    
T  25948907 acactgaattatgtgattttttcaaattattagccgtatcggcatgtcagtgtccgtgtctgtgcttcatagt 25948979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26492225 - 26492268
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| | |||||||||||||||||||||| ||||||||    
T  26492225 acactgaattgtatgattttttcaaattattagctctgtcggcg 26492268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28812554 - 28812511
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||    
T  28812554 acactgaattatgtgatttcttcaaattattagttgtgtcggcg 28812511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34185143 - 34185186
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||    
T  34185143 acactgaattgtgtgattttttgaaattattagccgtgtcggcg 34185186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 55401114 - 55401071
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  55401114 acactaaattatgtgattttttcaaattattagttgtgtcggcg 55401071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35994758 - 35994799
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  35994758 acactgaattatgtgatttt-tcaaattattagctgtgtcggc 35994799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 49651810 - 49651848
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  49651810 tgaattatgtgattttttcaaattattagccgtgtcggc 49651848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 3865587 - 3865619
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| ||||||||||||||||||||||||||||    
T  3865587 tgtggttttttcaaattattagctgtgtcggcg 3865619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 10318065 - 10318097
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||||||||||||||||||||||||||    
T  10318065 tgtgactttttcaaattattagctgtgtcggcg 10318097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14747601 - 14747557
Alignment:
Q  1 acactgaattttgtgatttttt-caaattattagctgtgtcggcg 44  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||    
T  14747601 acactaaattatgtgatttttttcaaattattagctgtgtcggcg 14747557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 14829724 - 14829672
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||||| |||||||||| |||||||||||||||||||  |||| ||||||||||||    
T  14829724 tgaattatgtgattttt-caaattattagctgtgtcg--gcgtgtcagtgtctgtg 14829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 14832127 - 14832095
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||||||||||||||||||| ||||||    
T  14832127 tgtgattttttcaaattattagctgtatcggcg 14832095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23870579 - 23870619
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| | ||||||||||||||||||||| ||||||    
T  23870579 acactgaattatatgattttttcaaattattagcggtgtcg 23870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 113338 - 113295
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  113338 acactgaattatgtgattttttcaaattattagctgtgtcggcg 113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5898286 - 5898343
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||||||||| ||||||||||||| ||||||||| ||||||  |||||||||||||||||    
T  5898286 acactgaattatgtgattttttcagattattagcggtgtcg--gcgtctcagtgtctgtg 5898343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 23738716 - 23738676
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  23738716 cactgaattatgtgattttttcaaattattagctgtgtcgg 23738676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 398785 - 398828
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  398785 acactgaattatgtgattttttcaaattattagcggtgtcggcg 398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1486729 - 1486768
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1486729 acactgaattatgtgattttttcaaattattagctgtgtc 1486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12443480 - 12443523
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  12443480 acactgaattatgtgattttctcaaattattagctgtgtcggcg 12443523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31015082 - 31015035
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtc 48  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  31015082 acactgaattatgtgattttctcaaattattagctgtgtaggcgcgtc 31015035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42359469 - 42359508
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  42359469 acactgaattttgtgattttttcaaattattagatgtgtc 42359508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31672915 - 31672956
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  31672915 acactgaattaagtgattttttcaaattattagctgtgtcgg 31672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 40917780 - 40917747
Alignment:
Q  11 ttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||||||||||||||    
T  40917780 ttgtgattttttcaaattattagctgtgtcggcg 40917747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16297303 - 16297343
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  16297303 acactgaattttgtgattttttcatattatttgctgtgtcg 16297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22515907 - 22515972
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtgcttcatag 68  Q
    ||||| |||| |||||||||||||||||||||||||||||   |||| || ||||| |||||||||||    
T  22515907 acactaaattatgtgattttttcaaattattagctgtgtc--tgcgtgtccgtgtccgtgcttcatag 22515972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 38078685 - 38078721
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38078685 tgaattatgtgattttttcaaattattagctgtgtcg 38078721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 1262919 - 1262880
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  1262919 tgaattatgtgattttctcaaattattagctgtgtcggcg 1262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2896141 - 2896184
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  2896141 acactgaattatgtgattttctcaaattattagcggtgtcggcg 2896184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22881636 - 22881679
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  22881636 acactaaattatgtgattttttcaaattattagttgtgtcggcg 22881679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24577206 - 24577245
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  24577206 acactgaattatgtgattttttcaaattattagttgtgtc 24577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36878500 - 36878457
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  36878500 acactgaattatgtgattttctcaaattattagcggtgtcggcg 36878457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37598870 - 37598828
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  37598870 acactgaattt-gtgattttttcaaattattagttgtgtcggcg 37598828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 46348403 - 46348446
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| | |||||||||||||||||||||||||||||||    
T  46348403 acactaaattatatgattttttcaaattattagctgtgtcggcg 46348446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 1705015 - 1705053
Alignment:
Q  4 ctgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1705015 ctgaattatgtgattttttcaaattattagatgtgtcgg 1705053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 23705489 - 23705519
Alignment:
Q  4 ctgaattttgtgattttttcaaattattagc 34  Q
    |||||||||||||||||||||||||||||||    
T  23705489 ctgaattttgtgattttttcaaattattagc 23705519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1864900 - 1864941
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||||||||| ||||||||||| |||||||||    
T  1864900 acactgaattatgtgattttctcaaattattaactgtgtcgg 1864941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 9103673 - 9103636
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  9103673 aattatgtgattttttcaaattattaactgtgtcggcg 9103636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17754350 - 17754309
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  17754350 acactgaattatgtaattttttcaaattattagcggtgtcgg 17754309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 18556482 - 18556519
Alignment:
Q  7 aattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  18556482 aattatgtgatattttcaaattattagctgtgtcggcg 18556519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21378617 - 21378576
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
T  21378617 acactgaattatgtaattttttcaatttattagctgtgtcgg 21378576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23653038 - 23652997
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  23653038 acactgaagtatgtgattttttcaaattattagctttgtcgg 23652997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40258953 - 40258994
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| |||||||||||||||||||||  ||||||||    
T  40258953 acactgaattatgtgattttttcaaattattaattgtgtcgg 40258994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 17778577 - 17778549
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||||||||||||||||||||||    
T  17778577 tgtgattttttcaaattattagctgtgtc 17778549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 7677743 - 7677677
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtgcttcatag 68  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||| || || || |||||||||||    
T  7677743 cactgaattatgtgattttttcaaattattagctgtgtcggtccgtgtccgtttccgtgcttcatag 7677677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21191076 - 21191118
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  21191076 acactgaattatgtgattttttcaaattattagctgtgtcggc 21191118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6247661 - 6247618
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  6247661 acactgaattatgtgattttttcaaattattagatgtgtcggcg 6247618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14674308 - 14674265
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  14674308 acactaaattatgtgattttttcaaattattagctgtgtcggcg 14674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21576765 - 21576808
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  21576765 acactgaattatgtgattttttcaaattattagctgtgttggcg 21576808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 31084358 - 31084319
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  31084358 tgaattatgtgattttttcaaattattagctgtgtcggcg 31084319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39698580 - 39698541
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  39698580 acactgaattatgtgattttttcaaattattagctgtgtc 39698541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37328864 - 37328905
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  37328864 acactgaattttgtgatttttacaaattatttgctgtgtcgg 37328905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42893399 - 42893358
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  42893399 acactggattatgtgattttttcaaattattagctgtgtcgg 42893358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13287419 - 13287459
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  13287419 acactgaattatgtgattttttcaaattattatctgtgtcg 13287459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 17177047 - 17177086
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  17177047 tgaattttttgattttttcaaattattagctgtgttggcg 17177086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19552563 - 19552606
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  19552563 acacttaattatgtgattttttcaaattattaactgtgtcggcg 19552606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21522789 - 21522746
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||    
T  21522789 acactgaattatgttattttttaaaattattagctgtgtcggcg 21522746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21533355 - 21533312
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||    
T  21533355 acactgaattatgttattttttaaaattattagctgtgtcggcg 21533312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3966542 - 3966500
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||    
T  3966542 acactgaattgtgtgattttctcaaattattagcggtgtcggc 3966500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 19579739 - 19579697
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||| |||| ||||||||| |||||||||||||||||||||||    
T  19579739 cactaaattatgtgattttctcaaattattagctgtgtcggcg 19579697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41633774 - 41633733
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||| | |||||||||||||||||||||||||    
T  41633774 acactgaattatgtaaatttttcaaattattagctgtgtcgg 41633733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 22611761 - 22611805
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcgcgtct 49  Q
    |||||| ||||||||||||||||||||||  ||||||||| ||||    
T  22611761 tgaattatgtgattttttcaaattattaggagtgtcggcgtgtct 22611805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 41995506 - 41995453
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||||| |||||||||||| ||||||||| |||||||  |||| ||||||||||||    
T  41995506 tgaattatgtgattttttcgaattattagttgtgtcg--gcgtgtcagtgtctgtg 41995453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43001839 - 43001799
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||| ||||||||||||||||||| ||||||    
T  43001839 acactgaattatgtaattttttcaaattattagcagtgtcg 43001799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 23293008 - 23293049
Alignment:
Q  3 actgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  23293008 actgaattatgtgattttttcaaattattagctgtgtcggcg 23293049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3947786 - 3947828
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  3947786 acactgaattatgcgattttttcaaattattagctgtgtcggc 3947828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21945542 - 21945500
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||| ||||||||||||||||||||||||||||    
T  21945542 acactgaattatgtcattttttcaaattattagctgtgtcggc 21945500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49431065 - 49431021
Alignment:
Q  1 acactgaattttgtgatttttt-caaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  49431065 acactgaattatgtgatttttttcaaattattagctgtgtcggcg 49431021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11596372 - 11596415
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||    
T  11596372 acactgaattatgtgattttttcaaattattagctttgttggcg 11596415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 11651155 - 11651194
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  11651155 cactgaattatgtgatttttttaaattattagctgtgtcg 11651194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 12895140 - 12895179
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  12895140 tgaattatgtgattttttcaaattattagctgtttcggcg 12895179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28964268 - 28964307
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  28964268 acactgaattatgtgattttttcaaattattagctatgtc 28964307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50280920 - 50280877
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||    
T  50280920 acacttaattatgtgaatttttcaaattattagctgtgtcggcg 50280877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54580043 - 54580082
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  54580043 acactgaattatgtgattttttcaaattattagttgtgtc 54580082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29205483 - 29205445
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgt 39  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  29205483 acactgaattatgtgattttttcaaattattagccgtgt 29205445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2361995 - 2362036
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  2361995 acactaaattatgtaattttttcaaattattagctgtgtcgg 2362036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8423738 - 8423779
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||||||||| ||||||||||||| |||||||    
T  8423738 acactgaattatgtgattttctcaaattattagcggtgtcgg 8423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38847032 - 38847073
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  38847032 acactgaataatatgattttttcaaattattagctgtgtcgg 38847073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19482707 - 19482650
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtctcagtgtctgtg 60  Q
    |||| ||||| |||||| ||||||||||||||| |||||||  |||| ||||||||||||    
T  19482707 acaccgaattatgtgatattttcaaattattagttgtgtcg--gcgtgtcagtgtctgtg 19482650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30298986 - 30298942
Alignment:
Q  1 acactgaattttgtgatttttt-caaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||||    
T  30298986 acactgaattatgtcatttttttcaaattattagctgtgtcggcg 30298942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30327854 - 30327810
Alignment:
Q  1 acactgaattttgtgatttttt-caaattattagctgtgtcggcg 44  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||||    
T  30327854 acactgaattatgtcatttttttcaaattattagctgtgtcggcg 30327810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33383 - 33431
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtct 49  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  33383 acactgaattatgttattttttcaaattattagctgtgtcggcgtgtct 33431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14569 - 14526
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  14569 acactgaattatgtgattttttcaaattattagttgtgtcggcg 14526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46721 - 46678
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  46721 acactgaattatgtgattttttcaaattattaactgtgtcggcg 46678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21374719 - 21374762
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  21374719 acactgaattatgtaattttttcaaattattagctgtgtcggcg 21374762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28677948 - 28677905
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  28677948 acactgaattatgtgattttttcaaattattagcggtgtcggcg 28677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 24894427 - 24894385
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  24894427 cactgaattatgtgatttttttaaattattagctgtgtcggcg 24894385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30717550 - 30717591
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  30717550 acactgaattatgtgattttttcaaattattagctttgtcgg 30717591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 38117190 - 38117222
Alignment:
Q  12 tgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||||||||||||||||||||||||||    
T  38117190 tgtgattttttcaaattattagctgtgtcggcg 38117222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2438739 - 2438778
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtc 40  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  2438739 acactgaattatgtgattttttgaaattattagctgtgtc 2438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21616801 - 21616758
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  21616801 acactgaattatgtgattttctcaaattattagcggtgtcggcg 21616758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21782838 - 21782881
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  21782838 acactgaattatgtgattttctcaaattattagcagtgtcggcg 21782881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30404870 - 30404913
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||||||||||||||| | |||||||||    
T  30404870 acactgaattatgtgattttttcaaattattaaccgtgtcggcg 30404913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37419782 - 37419739
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  37419782 acactgaattttgtgattttttcaaattatttgccatgtcggcg 37419739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 37559012 - 37558973
Alignment:
Q  5 tgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  37559012 tgaattatgtgatttttacaaattattagctgtgtcggcg 37558973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37411264 - 37411306
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||    
T  37411264 acactgaattatgtgattttctcaaattattagcggtgtcggc 37411306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11223883 - 11223931
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtct 49  Q
    |||||||||| ||| ||||||||||| ||||||||||||| ||| ||||    
T  11223883 acactgaattatgttattttttcaaaatattagctgtgtcagcgtgtct 11223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19536417 - 19536461
Alignment:
Q  1 acactgaattttgtgatttt-ttcaaattattagctgtgtcggcg 44  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||    
T  19536417 acactgaattatgtgatttttttcaaattattagttgtgtcggcg 19536461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20539694 - 20539734
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  20539694 acactaaattatatgattttttcaaattattagctgtgtcg 20539734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 241633 - 241590
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||    
T  241633 acactaaattatgtgatttttccaaattattagctgtgtcggcg 241590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13438 - 13396
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||    
T  13438 cactgaattatgtgattttctcaaattattagttgtgtcggcg 13396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 21889 - 21931
Alignment:
Q  2 cactgaattttgtgattttttcaaattattagctgtgtcggcg 44  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||    
T  21889 cactgaattatgtgattttctcaaattattagttgtgtcggcg 21931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 8824 - 8794
Alignment:
Q  14 tgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||||||||||||||||||||||||    
T  8824 tgattttttcaaattattagctgtgtcggcg 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 130521 - 130479
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggc 43  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||    
T  130521 acactgaattatgtgattttttcaaactattaactgtgtcggc 130479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 71764 - 71719
Alignment:
Q  1 acactgaattttgtgatttttt--caaattattagctgtgtcggcg 44  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||    
T  71764 acactgaattgtgtgattttttttcaaattattagctgtgtcggcg 71719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1074 - 1033
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcgg 42  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  1074 acactgaattatgtaattttttcaaattattagcggtgtcgg 1033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8049 - 8001
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcggcgcgtct 49  Q
    |||||| ||| | |||||||||||||||||||| |||||||||| ||||    
T  8049 acactgtattatatgattttttcaaattattagttgtgtcggcgtgtct 8001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 70317 - 70277
Alignment:
Q  1 acactgaattttgtgattttttcaaattattagctgtgtcg 41  Q
    |||||||||| ||| ||||||||||||||||| ||||||||    
T  70317 acactgaattatgttattttttcaaattattaactgtgtcg 70277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 178838 - 178882
Alignment:
Q  1 acactgaattttg-tgattttttcaaattattagctgtgtcggcg 44  Q
    |||||||||| || |||||||||||||||||||| ||||||||||    
T  178838 acactgaattatgatgattttttcaaattattagttgtgtcggcg 178882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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