View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_45 (Length: 377)
Name: NF1614_low_45
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 3219362 - 3219022
Alignment:
| Q |
19 |
attatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219362 |
attatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttc |
3219263 |
T |
|
| Q |
119 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219262 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
3219163 |
T |
|
| Q |
219 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3219162 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgctgcccagaacagat |
3219063 |
T |
|
| Q |
319 |
gttatgcgcattagaccatggtatattctatttgccttttc |
359 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
3219062 |
gttatgcgcattagacgatggtatattctatttgccttttc |
3219022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 15986319 - 15986658
Alignment:
| Q |
19 |
attatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttc |
118 |
Q |
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||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||| |||||||||| |||| ||||||| |||||||||| |
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| T |
15986319 |
attatactatatactttatatttatatctggataggcagatgctgtgtatttggatcatatcgtacgaagttgacagagtgtatgttttgaagcaggttc |
15986418 |
T |
|
| Q |
119 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
15986419 |
ttattattgatcatgcagatgtaatgacaatgcaggttagcattctttgtttaaattattgcagaaaattgactttacccatgatttgaactacagtag- |
15986517 |
T |
|
| Q |
219 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagat |
318 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15986518 |
ccagtttctcattattgttgaaacttgtcagaattggtctcatgtgcgtccagttattgaacacttgaaccgcttaccatctacgccgcccagaacagat |
15986617 |
T |
|
| Q |
319 |
gttatgcgcattagaccatggtatattctatttgccttttc |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
15986618 |
gttatgcgcattagaccatggtatattctatttggcttttc |
15986658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 23727603 - 23727396
Alignment:
| Q |
87 |
agttgacaaagtgaatgt-ttttaagcaggttcttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaa |
185 |
Q |
| |
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|||||||| |||| |||| |||||| ||| |||| ||||||||||| |||||| |||| |||||||||||| | ||| | ||||||||||||||||| || |
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| T |
23727603 |
agttgacagagtgtatgtcttttaaccagattctcattattgatcacgcagatataatagcaatgcaggtttgtattatatgtttaaattattgcaacaa |
23727504 |
T |
|
| Q |
186 |
attgacttttcccatgatttgaactac---agtagtcctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacac |
282 |
Q |
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||||||||| |||||||||||||| || | | | |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||| |||| |
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| T |
23727503 |
attgactttacccatgatttgaacgacgctatgaattgtgtttctcattattgttgaaacttgtcaggattggtctcatgttaataccattattcaacag |
23727404 |
T |
|
| Q |
283 |
ttaaaccg |
290 |
Q |
| |
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|||||||| |
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|
| T |
23727403 |
ttaaaccg |
23727396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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