View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_48 (Length: 361)
Name: NF1614_low_48
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 4242476 - 4242134
Alignment:
| Q |
1 |
gtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaatttcnnnnnnnnnnnnnnnggtatggttgatggatattatgaggacc |
100 |
Q |
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| T |
4242476 |
gtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaatttcagaagaaaaaaaaaaggtatggttgatggatattatgaggacc |
4242377 |
T |
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| Q |
101 |
aagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgagaa |
200 |
Q |
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| T |
4242376 |
aagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgagaa |
4242277 |
T |
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| Q |
201 |
agtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtgcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242276 |
agtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtgcg |
4242177 |
T |
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| Q |
301 |
ttaaatgaatgtttacgtatcaatggtcatgaatctctgctct |
343 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
4242176 |
ttaaatgaatgtttacatatcaatgctcatgaatctctgctct |
4242134 |
T |
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