View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_50 (Length: 354)
Name: NF1614_low_50
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 131 - 343
Target Start/End: Complemental strand, 6410944 - 6410732
Alignment:
| Q |
131 |
attgataaagtaaaaacatacaaaacataacaggaaccgaagtttgacataaagttgcagttgaatttaatgcacaaatatcggaaaccaacaaatccag |
230 |
Q |
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| T |
6410944 |
attgataaagtaaaaacatacaaaacataacaggaaccgaagtttgacataaagttgcagttgaatttaatgcacaaatatcggaaaccaacaaatccag |
6410845 |
T |
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| Q |
231 |
caaggatgcacaagcaatcccacaaaacaaagtgaataaagtttggtttcagtgctataatcgtttattaggtttaaacaaaggataccattgcaagagg |
330 |
Q |
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| T |
6410844 |
caaggatgcacaagcaatcccacaaaacaaagtgaataaagtttggtttcagtgctataatcgtttattaggtttaaacaaaggataccatcgcaagagg |
6410745 |
T |
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| Q |
331 |
caaccattctcat |
343 |
Q |
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| T |
6410744 |
caaccattctcat |
6410732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 6411025 - 6410941
Alignment:
| Q |
18 |
taatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaacacaacagttttccatgttggacatatcgattg |
102 |
Q |
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| T |
6411025 |
taatgcacaacgaaggaacaaataactctaacaaacagataaatgaaacaaacacaacagttttccatgttggacatatcgattg |
6410941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 9819395 - 9819588
Alignment:
| Q |
18 |
taatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaacacaacagttttccatgttggacat---atcgattggtaattaacaac |
114 |
Q |
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| T |
9819395 |
taatgcacaacaaaggaaccaacgactttaacaaacagataaatgaaacaaacacaacagtttttcatgttgtatattccatcaatcagtaattaacaat |
9819494 |
T |
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| Q |
115 |
gatccattaagatgctattgataaagtaaaaacatacaaaacataacaggaaccgaagtttgacataaagttgcagttgaatttaatgcacaaat |
209 |
Q |
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| T |
9819495 |
gatccattacgttaccattgat-caggaaaaacataatatacacagcatgaaccgaagtttgacatgatgttgcagttgaatataaagcacaaat |
9819588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4967845 - 4967914
Alignment:
| Q |
18 |
taatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaacacaacagttttccatgttg |
89 |
Q |
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|||||||||| |||| ||| || |||| |||||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
4967845 |
taatgcacaatgaagtaaccaacaactctaacaagcagataaatgaaacaa--acaacagtttttcatgttg |
4967914 |
T |
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