View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_53 (Length: 351)
Name: NF1614_low_53
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 54473728 - 54473402
Alignment:
| Q |
18 |
attttagtcatttgtcaaaattagattacaagcacatagtaacttacagtcctcatgtaaataagcaagtcctttggcggatccaaccgcaattttaagc |
117 |
Q |
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| T |
54473728 |
attttagtcatttgtcaaaattagattacaagcacatagtaacttacagtcctcgtgtaaataagcaagtcctttggcggatccaaccgcaattttaagc |
54473629 |
T |
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| Q |
118 |
cttgtggcccaatccatcacaggtcgaccctttcctgcaaaaaattaatattacatacaagagtgtcaaattaaatccaacaaacaagtaatattaatta |
217 |
Q |
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| T |
54473628 |
cttgtggcccaatccatcacaggtcgaccctttcctgcaaaaaattaatattacatacaagagtgtcaaattaaatccaacaaacaagtaatattaatta |
54473529 |
T |
|
| Q |
218 |
tagtttgaaagatagcttaccatgaaggtgataatcaagggtcttgttgggaacaaattcataaacaagaagctttttagattcagaaatgcaatagcca |
317 |
Q |
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| T |
54473528 |
tagtttgaaagatagcttaccatgaaggtgataatcaagggtcttgttgggaacgaattcataaacaagaagctttttagattcagaaatgcaatagcca |
54473429 |
T |
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| Q |
318 |
acaagcgagacaagatagtgatgatgt |
344 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
54473428 |
acaagcgagacaagatagcgatgatgt |
54473402 |
T |
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