View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_57 (Length: 340)
Name: NF1614_low_57
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_57 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 26052696 - 26053013
Alignment:
| Q |
20 |
gcagaaagaatccctttggttgatctcatcgtccatgtcactgatgcaaggattccattctcctctcaatgtcatttactcacacaaacttcacataatc |
119 |
Q |
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| T |
26052696 |
gcagaaagaatccctttggttgatctcatcgtccatgtcactgatgcaaggattccattctcctctcaatgtcatttactcacaca---------taatc |
26052786 |
T |
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| Q |
120 |
atattctcgctctcaataaagctgatctcgcttctcgttcctctttacaggttcattacttctcttcttttactgttcataagctgtttaacaaaatagc |
219 |
Q |
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| T |
26052787 |
atattatcgttctcaataaagctgatctcgcttctcgttcctctttacaggttcgttacttctcttcttttactgttcataagctgtttaagaaaatagc |
26052886 |
T |
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| Q |
220 |
tt------atatgagtgacaataacttaacttttnnnnnnnttattctgtaaacaggtatggatggattattttagggaaacgaactgcgtatcttgtgg |
313 |
Q |
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| T |
26052887 |
ttatatgaatatgagtgagaataacttaactttaaaaaaaaaaaatctgtaaacaggtatggatggattattttagggaaacgaactgcgtatcttgtgg |
26052986 |
T |
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| Q |
314 |
agtcgatgctcataacaaggagagcat |
340 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26052987 |
agtcgatgctcataacaaggagagcat |
26053013 |
T |
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