View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_6 (Length: 719)
Name: NF1614_low_6
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 618; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 39126985 - 39127614
Alignment:
| Q |
1 |
accactcatcagaacatggataatggacaagttctctatggagaatccatgtatcttgtaaacataatagcaagcaatggcaaagaacttgagccgggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
39126985 |
accactcatcagaacatggataatggacaagttctctatggagaatccatgtatcttgtaaacattatagcaagcaatggcaaagaacttgagccggttt |
39127084 |
T |
|
| Q |
101 |
acctaagtggtggagatagtgagagtcaatttgcctcaatactctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127085 |
acctaagtggtggagatagtgagagtcaatttgcctcaatactctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatg |
39127184 |
T |
|
| Q |
201 |
gaagatcagaaaagggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttca |
300 |
Q |
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| T |
39127185 |
gaagatcagaaaagggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttca |
39127284 |
T |
|
| Q |
301 |
tgtcttgcctgcaacattagtaggatttgatgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127285 |
tgtcttgcctgcaacattagtaggatttgatgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaa |
39127384 |
T |
|
| Q |
401 |
acaataatagggaagtctatagcaccagcattagcaagattctcagttagagggaaaagtttacaaaccattcaatccttaaaccaaattttatagctcc |
500 |
Q |
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| T |
39127385 |
acaataatagggaagtctatagcaccagcattagcaagattctcagttagagggaaaagtttacaaaccattcaatccttaaaccaaattttatagctcc |
39127484 |
T |
|
| Q |
501 |
acagtcaacattattgctgcatggcctcagaaccttggtccgataagccttccagagaacaccagaagactgacttctctatcatgttagacacctcaat |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39127485 |
acagtcaacattattgctgcatggcctcagaaccttggtccgataagccttccagagaacaccagaagactgacttctctatcatgtttgacacctcaat |
39127584 |
T |
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| Q |
601 |
gacatgtcctcatgtcagtggaattgcagc |
630 |
Q |
| |
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| T |
39127585 |
gacatgtcctcatgtcagtggaattgcagc |
39127614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 615
Target Start/End: Complemental strand, 39480428 - 39479823
Alignment:
| Q |
15 |
catggataatggacaagttctctatggagaatccatgtatcttgtaaacataatagcaagcaatggcaaagaacttgagccgggttacctaagtggtgga |
114 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||| || |||||| |||||| |
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| T |
39480428 |
catgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctggtttacctctctggtggg |
39480329 |
T |
|
| Q |
115 |
gatagtgagagtcaattt-gcctcaatac-tctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaa |
212 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |||| ||| |||| ||| |||||||||| ||||||||||||| |
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| T |
39480328 |
gatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtgtcaacggaagatcagaaa |
39480229 |
T |
|
| Q |
213 |
agggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttcatgtcttgcctgc |
312 |
Q |
| |
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||||||||| |||||| |||||| || || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
39480228 |
agggtcaagctgtgaaggaagcaggtggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttgatgttcatctcttacctgc |
39480129 |
T |
|
| Q |
313 |
aacattagtaggatttgatgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaaacaataataggg |
412 |
Q |
| |
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|||||| |||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||| ||| ||| |
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| T |
39480128 |
aacattggtaggatttgatgaatcagtcaccttgaaaacttacataaactccacaacaaggccacttgctaggattgaatttggaggaactgtaactggg |
39480029 |
T |
|
| Q |
413 |
aagtctatagcaccagcattagcaagattctcagttagagggaaaagttt-acaaaccattcaatccttaaaccaaattttatagctcca-cagtcaaca |
510 |
Q |
| |
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||||||| |||||||||| ||||| |||||||| |||||| |||||| ||||||| |||||||||||||||| || ||||||||||| |||||||| |
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| T |
39480028 |
aagtctagagcaccagcagtagcagtattctcagctagaggaccaagtttcacaaacccttcaatccttaaaccagatgttatagctccaggagtcaaca |
39479929 |
T |
|
| Q |
511 |
ttattgctgcatggcctcagaaccttggtccgataagccttccagagaacaccagaagact-gacttctctatcatgttagacacctcaatgacatgtcc |
609 |
Q |
| |
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| ||||||||||||||||||||||||||||| | |||| ||||| |||| |||||| | |||||||| |||||| || ||||||||| ||||||| |
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| T |
39479928 |
tcattgctgcatggcctcagaaccttggtcctactggcctaccagatgacactagaagagtaaacttctctgtcatgtcaggtacctcaatgtcatgtcc |
39479829 |
T |
|
| Q |
610 |
tcatgt |
615 |
Q |
| |
|
|||||| |
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|
| T |
39479828 |
tcatgt |
39479823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 632 - 719
Target Start/End: Original strand, 39127729 - 39127816
Alignment:
| Q |
632 |
atccagtactgtgctggtatatgatattaggctagatgattatgtcaaagtcaaacacctttgcagcaaaggtcagaagatattcagt |
719 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
39127729 |
atccagtactgtgctggtatatgatattaggccagatgattatgtcaaagtcaaacacatttgcagcaaaggtcaaaagatattcagt |
39127816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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