View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_67 (Length: 318)

Name: NF1614_low_67
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_67
NF1614_low_67
[»] chr1 (1 HSPs)
chr1 (19-308)||(48501382-48501671)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 48501671 - 48501382
Alignment:
Q  19 ttagtaaccttcatggtattcttacaaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaacccta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501671 ttagtaaccttcatggtattcttacaaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaacccta 48501572  T
Q  119 atttcctcccactccttctccaactcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501571 atttcctcccactccttctccaactcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaa 48501472  T
Q  219 accagagcccattgcatggatcatagactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcctttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48501471 accagagcccattgcatggatcatagactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttg 48501382  T

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