View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_69 (Length: 315)
Name: NF1614_low_69
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_69 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 43800083 - 43799907
Alignment:
| Q |
1 |
cattatttaatcaattatgctacactattatatttaatcgatccattgatgctaattgtttctattacagctgtggttaattagatacactactataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43800083 |
cattatttaatcaattatgctacactattatatttaatcgatccattgatgctaattgtttctattacagctgtggttaattagatacactactataata |
43799984 |
T |
|
| Q |
101 |
gttgaagttcatgtttagattgaataggattaagctaaatcatgacttgctaaatcataacttttgttacattatgg |
177 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43799983 |
gtttaagttcatgtttagattgaataggattaagctaaatcatgacttgctaaatcataacttttgttacattatgg |
43799907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University