View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_74 (Length: 307)
Name: NF1614_low_74
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 22362307 - 22362019
Alignment:
| Q |
7 |
gattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatctt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22362307 |
gattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatatt |
22362208 |
T |
|
| Q |
107 |
gctg---ggttcttattcatcttttctttttcatgcgttgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccat |
203 |
Q |
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|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22362207 |
gctgctgggttcttattcatcttttctatttcatgcattgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccat |
22362108 |
T |
|
| Q |
204 |
agtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaatcaaagtaggagacatattct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362107 |
agtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaatcaaagtaggagacatattct |
22362019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39814908 - 39815019
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
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||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| |||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39814908 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaac |
39815007 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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| T |
39815008 |
caatgcaatgga |
39815019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39805623 - 39805734
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39805623 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39805722 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
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|||||||||||| |
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| T |
39805723 |
caatgcaatgga |
39805734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39825987 - 39826098
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39825987 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39826086 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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|
| T |
39826087 |
caatgcaatgga |
39826098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39902548 - 39902659
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39902548 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39902647 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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|
| T |
39902648 |
caatgcaatgga |
39902659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39911006 - 39911117
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39911006 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39911105 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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|
| T |
39911106 |
caatgcaatgga |
39911117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39922149 - 39922260
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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|
| T |
39922149 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39922248 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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|
| T |
39922249 |
caatgcaatgga |
39922260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 39927845 - 39927956
Alignment:
| Q |
152 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
251 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
39927845 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
39927944 |
T |
|
| Q |
252 |
caatgcaatgga |
263 |
Q |
| |
|
|||||||||||| |
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|
| T |
39927945 |
caatgcaatgga |
39927956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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