View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_8 (Length: 713)
Name: NF1614_low_8
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 676; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 21 - 700
Target Start/End: Original strand, 42324369 - 42325048
Alignment:
| Q |
21 |
aggaaaccgctgaagcattccttggcaagactattcgtgatgccgtggtcactgtcccaggtgaattacaacttgttcctcatgcaatttgattattttc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324369 |
aggaaaccgctgaagcattccttggcaagactattcgtgatgccgtggtcactgtcccaggtgaattacaacttgttcctcatgcaatttgattattttc |
42324468 |
T |
|
| Q |
121 |
ttccccattttgtcttcattttaacgtttctggtcttcttttgaatttacagcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324469 |
ttccccattttgtcttcattttaacgtttctggtcttcttttgaatttacagcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtca |
42324568 |
T |
|
| Q |
221 |
ttgctggtttgaatgtggctagaatcattaacgaacctaccgctgctgccattgcttatggattggacaagaaaggtggagagaagaacattcttgtctt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324569 |
ttgctggtttgaatgtggctagaatcattaacgaacctaccgctgctgccattgcttatggattggacaagaaaggtggagagaagaacattcttgtctt |
42324668 |
T |
|
| Q |
321 |
tgatcttggaggtggaacttttgatgtcagtatcttgacaattgacaatggtgtttttgaggttctttctacaaatggagatacccatcttggaggtgag |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324669 |
tgatcttggaggtggaacttttgatgtcagtatcttgacaattgacaatggtgtttttgaggttctttctacaaatggagatacccatcttggaggtgag |
42324768 |
T |
|
| Q |
421 |
tacttatatatgtataagagaaagaataagattaaattaagacagattttacttctgttgttattgcttgccaagtgctaactcttcaattgtttaccag |
520 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324769 |
tacttatatatgtataagagaaagaataagattagattaagacagattttacttctgttgttattgcttgccaagtgctaactcttcaattgtttaccag |
42324868 |
T |
|
| Q |
521 |
gtgaggactttgatcagagaataatggagtacttcattaaattgatcaagaaaaagcatagcaaggatattagcaaggacaacagagcacttggaaagct |
620 |
Q |
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| T |
42324869 |
gtgaggactttgatcagagaataatggagtacttcattaaattgatcaagaaaaagcatagcaaggatattagcaaggacaacagagcacttggaaagct |
42324968 |
T |
|
| Q |
621 |
gaggagggagagtgagcgtgccaagagagctcttagtagccagcaccaagtccgtgtggaaattgagtcactttttgatg |
700 |
Q |
| |
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| T |
42324969 |
gaggagggagagtgagcgtgccaagagagctcttagtagccagcaccaagtccgtgtggaaattgagtcactttttgatg |
42325048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 168 - 428
Target Start/End: Original strand, 42272393 - 42272653
Alignment:
| Q |
168 |
tacagcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtcattgctggtttgaatgtggctagaatcattaacgaacctaccgctgct |
267 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42272393 |
tacagcttactttaatgatgctcagaggcaggccaccaaggatgccggtgtcattgctggtttgaatgtggctagaatcattaatgaacccaccgctgct |
42272492 |
T |
|
| Q |
268 |
gccattgcttatggattggacaagaaaggtggagagaagaacattcttgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgaca |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42272493 |
gccattgcttatggattggacaagaaaggtggagagaagaacattctcgtctttgatcttggaggtggaacttttgatgtcagtatcttgacaattgata |
42272592 |
T |
|
| Q |
368 |
atggtgtttttgaggttctttctacaaatggagatacccatcttggaggtgagtacttata |
428 |
Q |
| |
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| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
42272593 |
acggtgtttttgaggttcttgctacaaacggagatactcatcttggaggtgagtacttata |
42272653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 517 - 700
Target Start/End: Original strand, 42272746 - 42272929
Alignment:
| Q |
517 |
ccaggtgaggactttgatcagagaataatggagtacttcattaaattgatcaagaaaaagcatagcaaggatattagcaaggacaacagagcacttggaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272746 |
ccaggtgaggactttgatcagagaataatggagtacttcattaaattgatcaagaaaaagcatagcaaggatattagcaaggacaacagagcacttggaa |
42272845 |
T |
|
| Q |
617 |
agctgaggagggagagtgagcgtgccaagagagctcttagtagccagcaccaagtccgtgtggaaattgagtcactttttgatg |
700 |
Q |
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| T |
42272846 |
agctgaggagggagagtgagcgcgccaagagagctcttagtagccagcatcaagtccgtgtggaaattgagtcactttttgatg |
42272929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 42272229 - 42272290
Alignment:
| Q |
21 |
aggaaaccgctgaagcattccttggcaagactattcgtgatgccgtggtcactgtcccaggt |
82 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
42272229 |
aggaaaccgccgaaggattccttggcaaaactattcgtgatgctgtggtcaccgtcccaggt |
42272290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 23587585 - 23587658
Alignment:
| Q |
208 |
gatgccggtgtcattgctggtttgaatgtggctagaatcattaacgaacctaccgctgctgccattgcttatgg |
281 |
Q |
| |
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||||||||||||||| |||| | |||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
23587585 |
gatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctaccgctgctgctattgcttatgg |
23587658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 36881021 - 36880991
Alignment:
| Q |
170 |
cagcttacttcaatgatgctcagaggcaggc |
200 |
Q |
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| T |
36881021 |
cagcttacttcaatgatgctcagaggcaggc |
36880991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 8017227 - 8017281
Alignment:
| Q |
170 |
cagcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtcattgc |
224 |
Q |
| |
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||||||||||||||||| | ||| | || ||||| |||||||||||||||||||| |
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|
| T |
8017227 |
cagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgc |
8017281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 8590992 - 8590926
Alignment:
| Q |
170 |
cagcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtcattgctggtttgaatgt |
236 |
Q |
| |
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||||||| || |||||| |||||||| | || ||||| ||||| |||||||||||||| |||||||| |
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| T |
8590992 |
cagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgt |
8590926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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