View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_82 (Length: 283)
Name: NF1614_low_82
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_82 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 33950784 - 33950530
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950784 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
33950685 |
T |
|
| Q |
119 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33950684 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatg |
33950585 |
T |
|
| Q |
219 |
tgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950584 |
tgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
33950530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 33973448 - 33973227
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaa |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33973448 |
ctatcaaactatttatttcttctctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaa |
33973349 |
T |
|
| Q |
119 |
tgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatg |
218 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||| || |||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
33973348 |
caatagccttgaactttggttctttcgtgctgtttcaactatttcagatattttgttcaagacatca------ttaaatcttgttgtaagggtaataata |
33973255 |
T |
|
| Q |
219 |
tgt---gtagcgctactcatgaatttga |
243 |
Q |
| |
|
||| || ||||||||||||||||||| |
|
|
| T |
33973254 |
tgtgtcgtggcgctactcatgaatttga |
33973227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 33990246 - 33990013
Alignment:
| Q |
33 |
atttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaac |
132 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||| || |||||| || |
|
|
| T |
33990246 |
atttcttctctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcac |
33990147 |
T |
|
| Q |
133 |
tttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgct |
229 |
Q |
| |
|
|||||| |||| ||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
33990146 |
tttggtgctttcgtgctgtttcaactatttgagatattttgttcaagacatcatg------aaatcttgttgtaagggtaataatatgtgtagtggcgct |
33990053 |
T |
|
| Q |
230 |
actcatgaatttgagattccttcttctgtttttgcctgtc |
269 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
33990052 |
actcatgaatttgagattccttcctctgcttttgcctgtc |
33990013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
140 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
239 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
|
| Q |
240 |
ttg |
242 |
Q |
| |
|
||| |
|
|
| T |
33959249 |
ttg |
33959247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 33959431 - 33959346
Alignment:
| Q |
19 |
ctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatccttt |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||| |
|
|
| T |
33959431 |
ctattagactatttatttcctctctggggtgatccaaatgatcattgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University