View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_87 (Length: 278)
Name: NF1614_low_87
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 39228095 - 39227839
Alignment:
| Q |
7 |
tccaagaatatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
106 |
Q |
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| T |
39228095 |
tccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
39227996 |
T |
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| Q |
107 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
206 |
Q |
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| T |
39227995 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
39227896 |
T |
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| Q |
207 |
taactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttgg |
263 |
Q |
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| T |
39227895 |
taactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttgg |
39227839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 25547294 - 25547038
Alignment:
| Q |
7 |
tccaagaatatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
106 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
25547294 |
tccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaacaatgagttcaattgttcactac |
25547195 |
T |
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| Q |
107 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
206 |
Q |
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| T |
25547194 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
25547095 |
T |
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| Q |
207 |
taactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttgg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547094 |
taactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttgg |
25547038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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