View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_88 (Length: 276)

Name: NF1614_low_88
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_88
NF1614_low_88
[»] chr5 (13 HSPs)
chr5 (19-270)||(12265092-12265342)
chr5 (81-270)||(30072557-30072742)
chr5 (55-270)||(26329543-26329757)
chr5 (91-270)||(25594141-25594322)
chr5 (125-234)||(23157312-23157421)
chr5 (214-268)||(24842254-24842308)
chr5 (24-208)||(25680975-25681159)
chr5 (174-270)||(17028796-17028892)
chr5 (162-262)||(18451729-18451829)
chr5 (214-270)||(24268662-24268718)
chr5 (214-270)||(24345292-24345348)
chr5 (132-271)||(18178625-18178766)
chr5 (46-115)||(16622283-16622352)
[»] chr6 (4 HSPs)
chr6 (133-266)||(30235860-30235993)
chr6 (122-271)||(16528127-16528279)
chr6 (132-270)||(22262865-22263006)
chr6 (172-262)||(17859976-17860066)
[»] chr8 (10 HSPs)
chr8 (24-271)||(32239644-32239891)
chr8 (172-260)||(22892738-22892826)
chr8 (190-271)||(13304947-13305027)
chr8 (51-208)||(15213305-15213461)
chr8 (52-211)||(16051849-16052007)
chr8 (193-271)||(28900810-28900888)
chr8 (132-271)||(18771417-18771560)
chr8 (133-198)||(18786169-18786234)
chr8 (51-181)||(5569751-5569879)
chr8 (219-271)||(28260027-28260079)
[»] chr4 (11 HSPs)
chr4 (19-270)||(15192605-15192854)
chr4 (115-270)||(47024239-47024394)
chr4 (175-270)||(18898521-18898616)
chr4 (56-235)||(12110851-12111029)
chr4 (54-129)||(34863890-34863964)
chr4 (213-270)||(12806445-12806502)
chr4 (186-262)||(1695399-1695474)
chr4 (51-115)||(27303131-27303195)
chr4 (190-270)||(5676735-5676818)
chr4 (222-271)||(29438001-29438050)
chr4 (51-115)||(25314884-25314948)
[»] scaffold0650 (1 HSPs)
scaffold0650 (132-270)||(5223-5361)
[»] chr7 (15 HSPs)
chr7 (64-268)||(9070845-9071048)
chr7 (119-250)||(7142525-7142656)
chr7 (132-200)||(4092048-4092116)
chr7 (150-202)||(20470330-20470382)
chr7 (224-271)||(9552727-9552774)
chr7 (88-269)||(21545344-21545524)
chr7 (132-270)||(5636691-5636833)
chr7 (215-270)||(7777580-7777635)
chr7 (132-195)||(10253352-10253415)
chr7 (172-231)||(26839717-26839776)
chr7 (190-260)||(7815855-7815924)
chr7 (195-270)||(9405347-9405418)
chr7 (219-271)||(5312265-5312317)
chr7 (51-154)||(7777695-7777798)
chr7 (227-271)||(9760684-9760728)
[»] chr1 (10 HSPs)
chr1 (55-270)||(11984708-11984924)
chr1 (54-262)||(9353371-9353579)
chr1 (55-270)||(23519224-23519436)
chr1 (52-202)||(25726222-25726371)
chr1 (52-202)||(25734630-25734779)
chr1 (174-262)||(26658020-26658107)
chr1 (54-165)||(12810571-12810681)
chr1 (193-262)||(9328547-9328616)
chr1 (219-271)||(21549225-21549277)
chr1 (175-260)||(9252162-9252247)
[»] scaffold0386 (2 HSPs)
scaffold0386 (88-262)||(8226-8402)
scaffold0386 (122-262)||(11256-11399)
[»] chr3 (8 HSPs)
chr3 (151-270)||(2729079-2729201)
chr3 (160-267)||(18066186-18066293)
chr3 (91-270)||(10342201-10342383)
chr3 (132-188)||(33578242-33578298)
chr3 (91-202)||(19218752-19218862)
chr3 (80-158)||(16970881-16970958)
chr3 (208-262)||(27415683-27415737)
chr3 (174-270)||(13911823-13911919)
[»] scaffold0171 (1 HSPs)
scaffold0171 (150-202)||(6710-6762)
[»] scaffold0190 (1 HSPs)
scaffold0190 (214-265)||(11159-11210)
[»] chr2 (8 HSPs)
chr2 (224-271)||(31274414-31274461)
chr2 (132-270)||(17884052-17884193)
chr2 (136-270)||(21504066-21504203)
chr2 (132-198)||(27917586-27917652)
chr2 (224-268)||(25460501-25460545)
chr2 (49-200)||(21844383-21844533)
chr2 (219-271)||(14921575-14921627)
chr2 (51-115)||(16593418-16593482)
[»] scaffold0282 (1 HSPs)
scaffold0282 (205-268)||(22108-22171)
[»] scaffold0362 (1 HSPs)
scaffold0362 (219-259)||(8233-8273)
[»] scaffold0186 (1 HSPs)
scaffold0186 (227-271)||(33231-33275)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 12265342 - 12265092
Alignment:
Q  19 cctaggcgcccagctgcggccagaatggacagtttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaatt 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||    
T  12265342 cctaggcgcccagctgcggccaaaatggacagtttgcttgtttttcaagctggatatgtgcaaaaatctcagttttcttcttttaaaccttaagtaa-tt 12265244  T
Q  119 atttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttct 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  12265243 atttgctataataagagatccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggtcaagcatcagagtttcaaggtaggatttct 12265144  T
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  12265143 tccttctcttgttctctctagtgtatatttttctattgttttgtaatgatgt 12265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 270
Target Start/End: Original strand, 30072557 - 30072742
Alignment:
Q  81 aaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaag 180  Q
    |||| |||| ||||||||| ||||||||||||| ||| ||||  |||||  ||||||||||| ||||| |||| |||||| | ||||| ||| |||||||    
T  30072557 aaaagctcagttttcttctcttaaaccttaagt-aatcatttaatataaatagagacccttgtacacattatttttcattcataaagctagcagttcaag 30072655  T
Q  181 gtaatggttaagcatcagagttttaaggtaggatttcttccttctcttg-ttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |    ||| |||||||||||||| |||| |||||| |  |||  |||||  ||||||||  |||||||||||||||||||||| |||||||    
T  30072656 g----ggtaaagcatcagagtttcaaggcaggattccaacctcatcttgactctctctagggtatatttttctattgttttgttatgatgt 30072742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 26329757 - 26329543
Alignment:
Q  55 cttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatatta 154  Q
    |||||||| |||||||||||  |||||||| |||| |||||||||  |||||| ||   || |  ||||||||||  |||  ||||||||| || ||||     
T  26329757 cttgttttccaagctggatcggtgcaaaaagctcagttttcttctcctaaaccctacccaa-tcgtttgctataaatagatgcccttgcactcattattt 26329659  T
Q  155 ttcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctat 254  Q
    | ||| |||||  | |  ||||||||| || ||| |||||| |||| || |||| ||||||||||||||||||| | |||||||  |||| |||||||||    
T  26329658 tccatatagaacactaatggttcaaggcaagggtcaagcattagagcttcaaggcaggatttcttccttctcttatcctctctagggtatgtttttctat 26329559  T
Q  255 tgttttgtgatgatgt 270  Q
    |||||||| |||||||    
T  26329558 tgttttgttatgatgt 26329543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 270
Target Start/End: Complemental strand, 25594322 - 25594141
Alignment:
Q  91 ttttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggtta 190  Q
    ||||||||| ||||||| |||||||   || |||||| |  ||| ||||||| ||| | ||||||||||||| ||||| || ||||||||| || |||||    
T  25594322 ttttcttctcttaaaccctaagtaagc-atatgctatcaatagacacccttgaacatattattattcatttataaagctagtggttcaaggcaagggtta 25594224  T
Q  191 agcatcagagttttaaggtag---gatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    | |||||||| |  |||| ||   |  ||| |||| ||||||||||||||||  ||| ||||||||||||||||| |||||||    
T  25594223 aacatcagagctccaaggaagagggtcttcatcctcctcttgttctctctaagatatgtttttctattgttttgttatgatgt 25594141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 23157421 - 23157312
Alignment:
Q  125 tataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttc 224  Q
    ||||| ||||||||||||||||| || ||||||||| ||||||   || || ||||| || ||| ||||||||||| || |||| ||| ||||||||| |    
T  23157421 tataaaaagagacccttgcacactattttattcattcagaaagttggcagtacaaggcaagggtcaagcatcagagcttcaaggaagggtttcttcctcc 23157322  T
Q  225 tcttgttctc 234  Q
    | ||||||||    
T  23157321 ttttgttctc 23157312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 24842254 - 24842308
Alignment:
Q  214 tttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgat 268  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||| |||||    
T  24842254 tttcttccttctcttgttctctctatagtatgcttttctattgttttgttatgat 24842308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 25680975 - 25681159
Alignment:
Q  24 gcgcccagctgcggccagaatggacagtttgcttgtttttcaagctggatctatgcaaaaatctcaattttc-ttcttttaaaccttaagtaaattattt 122  Q
    |||||||||| |  ||| |||||||||||||||||||||||||| ||||||  ||| |||| |  ||      |||| ||||||| |||| |||| ||||    
T  25680975 gcgcccagctacaaccaaaatggacagtttgcttgtttttcaagttggatcagtgccaaaagcaaaaaaaaaattctcttaaaccctaag-aaatcattt 25681073  T
Q  123 gctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaagg 208  Q
    |||||||  |||||| |||||||||| ||||| | ||| ||||||| || ||||||||| || ||| |||||| || |||| ||||    
T  25681074 gctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcattagggtttcaagg 25681159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 17028796 - 17028892
Alignment:
Q  174 gttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||| || ||| || |||||||| || || | || |||||||||||  |||||||||| ||  |||||||||||||||| ||||| |||||||    
T  17028796 gttcaaggcaagggtcaaacatcagagcttcaatgcagtatttcttccttaccttgttctctttagggtatatttttctattgatttgtaatgatgt 17028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 18451829 - 18451729
Alignment:
Q  162 agaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttg 261  Q
    ||||||| |||||||||||  || ||| |||||||| |||| ||||  | |||||| ||||  ||||||||||||||   ||| ||||||||||||||||    
T  18451829 agaaagctagcggttcaagtcaagggtcaagcatcaaagttctaagacatgatttcatcctcttcttgttctctctaggatatgtttttctattgttttg 18451730  T
Q  262 t 262  Q
    |    
T  18451729 t 18451729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 24268662 - 24268718
Alignment:
Q  214 tttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||||||||||||||||| ||  |||| ||||| ||||||||||| |||||||    
T  24268662 tttcttccttctcttgttctctttagggtatgtttttatattgttttgttatgatgt 24268718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 24345292 - 24345348
Alignment:
Q  214 tttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||||||||||||||||| ||  |||| ||||| ||||||||||| |||||||    
T  24345292 tttcttccttctcttgttctctttagggtatgtttttatattgttttgttatgatgt 24345348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 18178625 - 18178766
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggt--aggat-ttcttccttctctt 228  Q
    ||||||||||||||||  | ||||||||| | ||||| |  ||| ||||| |||||| || |||||||| || |||||  ||||| ||| |||| |||||    
T  18178625 agagacccttgcacacttttttattcattcaaaaagctaatggtacaaggcaatggtcaaacatcagagcttaaaggtggaggatcttcatcctcctctt 18178724  T
Q  229 gttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    ||||||||||  |||| ||||| ||||||||||| || |||||    
T  18178725 gttctctctagggtat-tttttttattgttttgtaataatgtc 18178766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 16622352 - 16622283
Alignment:
Q  46 gacagtttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaa 115  Q
    |||||||||||||||||  ||||||||||  |||||||| |||| |||||| || ||||||  |||||||    
T  16622352 gacagtttgcttgttttctaagctggatcggtgcaaaaagctcacttttctcctcttaaactctaagtaa 16622283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 30235993 - 30235860
Alignment:
Q  133 gagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttc 232  Q
    |||||| || |||||| |||| || ||| ||||| | |||||||||||  || ||| || |||||||||||||||||||||||||||||| |||||||||    
T  30235993 gagaccgtttcacacattattttttattcagaaaactagcggttcaagaaaagggtcaaacatcagagttttaaggtaggatttcttcctcctcttgttc 30235894  T
Q  233 tctctaatgtatatttttctattgttttgtgatg 266  Q
    ||||||  |||| ||||||||||||||| |||||    
T  30235893 tctctagggtatgtttttctattgttttatgatg 30235860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 16528127 - 16528279
Alignment:
Q  122 tgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaagg--taggat-ttct 218  Q
    ||||||||  ||||||| ||||||||| ||||||||||||||||||| ||  |||||||| || ||| ||||||  |||||  ||||   ||||| |||     
T  16528127 tgctataaatagagaccattgcacacattattattcatttagaaagctagttgttcaaggaaagggtcaagcattggagttccaaggcagaggatcttca 16528226  T
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||| |||||||||||||||  |||| ||||| ||||||||||| ||||||||    
T  16528227 tcctcctcttgttctctctagggtatgtttttgtattgttttgttatgatgtc 16528279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 270
Target Start/End: Original strand, 22262865 - 22263006
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggt--aggat-ttcttccttctctt 228  Q
    |||||| |||||||||| | ||||||||| ||||||| |||||||||||| || ||| |||||||| || || |||||  |||||   | ||||  ||||    
T  22262865 agagactcttgcacacacttttattcattgagaaagctagcggttcaaggcaagggtcaagcatcatagcttcaaggtagaggatcgccatcctcttctt 22262964  T
Q  229 gttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
     || |||||||||||| ||||||||||||||||| |||||||    
T  22262965 attttctctaatgtatgtttttctattgttttgtaatgatgt 22263006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 17860066 - 17859976
Alignment:
Q  172 cggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    |||||||| | || ||| || |||||||| || |||| | |||||||||||||||| ||||||| ||  |||| |||||||||||||||||    
T  17860066 cggttcaatgcaagggtcaaacatcagagcttcaaggcatgatttcttccttctctggttctctatatggtatgtttttctattgttttgt 17859976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 32239644 - 32239891
Alignment:
Q  24 gcgcccagctgcggccagaatggacagtttgcttgtttttc-aagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattattt 122  Q
    ||||||||  ||||||||||  |||| |||||||||||||| ||||||||||  || |||||  ||| ||||||||| || |||| ||||||| | ||      
T  32239644 gcgcccagaggcggccagaaacgacaatttgcttgtttttccaagctggatcggtgtaaaaaattcagttttcttctcttgaaccataagtaa-tcatag 32239742  T
Q  123 gctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttcct 222  Q
    |||||||   |||||||||||||||| ||||||| ||| ||||||| |||||||||| | || ||| || ||| ||||||  |||| | |||||| ||||    
T  32239743 gctataaattgagacccttgcacacattattatttattcagaaagctagcggttcaatgcaaaggtcaaacattagagttcaaaggcaagatttcatcct 32239842  T
Q  223 tctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
     |||||||||| ||||  | || ||||||||||| ||||| ||||||||    
T  32239843 cctcttgttctttctagagcatgtttttctattgatttgttatgatgtc 32239891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 22892826 - 22892738
Alignment:
Q  172 cggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgtttt 260  Q
    |||||||||| || ||| |||||||||||||| |||| |||||||||||||||||||||||||||||  |||| |||||||||| ||||    
T  22892826 cggttcaaggcaagggtcaagcatcagagtttcaaggaaggatttcttccttctcttgttctctctagggtatgtttttctattttttt 22892738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 13304947 - 13305027
Alignment:
Q  190 aagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||| ||||| ||||||||||| ||||||||| ||||||||||||  |||||||||||||||||||| | ||||||||    
T  13304947 aagcatcaaagtttcaaggtaggatt-cttccttcttttgttctctctagggtatatttttctattgttttcttatgatgtc 13305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 15213461 - 15213305
Alignment:
Q  51 tttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaat 150  Q
    |||||||||||| |||||| |||   |||||||| |||| ||||||||| || |||| ||||||| | || ||||||||  ||||||||| | | ||| |    
T  15213461 tttgcttgttttccaagcttgattggtgcaaaaagctcagttttcttctcttcaaccataagtaa-tcatatgctataaatagagaccctaggatacatt 15213363  T
Q  151 attattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaagg 208  Q
    ||| |||||| ||||||| |||||||||||| || ||| | |||||||||||| ||||    
T  15213362 atttttcattcagaaagctagcggttcaaggcaagggtcatgcatcagagtttcaagg 15213305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 16052007 - 16051849
Alignment:
Q  52 ttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaata 151  Q
    |||||||||||||||||||||||  || ||||| || | ||||||||| ||||||| ||  ||| | || || |||||  ||| ||||||||||||| |     
T  16052007 ttgcttgtttttcaagctggatcggtggaaaaaacttagttttcttctcttaaaccctatttaa-tcatatgttataaacagacacccttgcacacattc 16051909  T
Q  152 ttattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtag 211  Q
    ||||||||| ||||||| | |||||||||| || ||| || ||| |||||| ||||||||    
T  16051908 ttattcattaagaaagctaacggttcaaggaaagggtcaaccattagagttctaaggtag 16051849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 28900888 - 28900810
Alignment:
Q  193 catcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||| || |||||||||||||||||||||  |||||||||||   ||| ||||||||||||||||| ||||||||    
T  28900888 catcagagcttcaaggtaggatttcttccttcttgtgttctctctaggatatgtttttctattgttttgttatgatgtc 28900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 18771417 - 18771560
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatca-gagttttaaggtag--gat-ttcttccttctct 227  Q
    ||||||||||||||||  | ||||||||||||||| ||| || | ||||| |||||| |||||||| ||| || |||||||  ||| | | ||||  | |    
T  18771417 agagacccttgcacactcttttattcatttagaaatccatcgatacaaggcaatggtcaagcatcaggagcttcaaggtagatgatctccatcctcattt 18771516  T
Q  228 tgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||||||  |||| ||||||||||||||||| ||||||||    
T  18771517 tgttctctctagagtatctttttctattgttttgtaatgatgtc 18771560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 18786169 - 18786234
Alignment:
Q  133 gagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcag 198  Q
    |||||| ||||||||  | ||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  18786169 gagacctttgcacacttttttattcatttagaaagccatcggtacaaggaaatggtcaagcatcag 18786234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 5569879 - 5569751
Alignment:
Q  51 tttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaat 150  Q
    ||||||||||||||||| ||| || ||  ||||| || | |||| |||| ||||||| ||||| ||| ||||| |||||  |||||||||| |||||| |    
T  5569879 tttgcttgtttttcaagatgggtcgatagaaaaaacttagtttttttctcttaaaccctaagt-aatcatttgttataaatagagaccctt-cacacact 5569782  T
Q  151 attattcatttagaaagccagcggttcaagg 181  Q
     ||||||||| ||||| | | ||||||||||    
T  5569781 tttattcattcagaaaactaacggttcaagg 5569751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 28260079 - 28260027
Alignment:
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||| |||||||||||||||  |||| |||||||||| |||| ||||||||||    
T  28260079 tcctcctcttgttctctctatggtatgtttttctattattttatgatgatgtc 28260027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 15192605 - 15192854
Alignment:
Q  19 cctaggcgcccagctgcggccagaatggacagtttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaatt 118  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||| |||||   |||||||| |||| ||||||||| ||||||  ||||| |||     
T  15192605 cctaggcgccctgctacggccagaatgggtagtttgcttgtttttcaaggtggattggtgcaaaaagctcagttttcttctcttaaactctaagt-aatc 15192703  T
Q  119 atttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttct 218  Q
    |||| ||||||  |||||  |||| || || ||||||||||| |||||    |  | |||||| || ||| |||||| |||| || |||| |||| ||||    
T  15192704 attttctataaatagagattcttgtacccattattattcattcagaaacattgacgatcaaggcaagggtcaagcattagagcttcaaggaagga-ttct 15192802  T
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    || ||||||||||||||| |  || | ||||||||||||||||| |||||||    
T  15192803 tcgttctcttgttctctccagggtgtgtttttctattgttttgttatgatgt 15192854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 270
Target Start/End: Complemental strand, 47024394 - 47024239
Alignment:
Q  115 aattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggat 214  Q
    |||||||| ||||||  ||||||||||||||  | ||||||||||||||||      |||||||||  || ||| |||||||| ||  | |||| | |||    
T  47024394 aattattttctataaatagagacccttgcactaattattattcatttagaacattgacggttcaagacaagggtcaagcatcaaagcctcaaggcaagat 47024295  T
Q  215 ttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  47024294 ttcttccttctcttgttctctctaaggtatatttttctattgttttgttatgatgt 47024239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 18898521 - 18898616
Alignment:
Q  175 ttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    ||||||| || ||| ||| |||||||||| |||| | ||||||||||||| |||||| |||||||  ||| ||||||||||||||||| |||||||    
T  18898521 ttcaaggcaagggtcaagtatcagagtttcaaggaaagatttcttccttcccttgttttctctaagttatgtttttctattgttttgttatgatgt 18898616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 12111029 - 12110851
Alignment:
Q  56 ttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattat 155  Q
    |||||| ||||||| ||||  ||||||| ||||||||||||||| ||||||| |||| |||| ||||  |||||  ||| || ||||||| || |||| |    
T  12111029 ttgtttctcaagctagatcggtgcaaaattctcaattttcttctcttaaaccctaag-aaatcatttaatataaatagatacgcttgcactcattatttt 12110931  T
Q  156 tcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctct 235  Q
    ||||| | ||||    |||||||||| ||  ||||||||||||||||  | || | |||| ||||||  |||||||||||    
T  12110930 tcattcaaaaagttgacggttcaaggaaagtgttaagcatcagagttggatggcaagattgcttcctcttcttgttctct 12110851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 34863964 - 34863890
Alignment:
Q  54 gcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataa 129  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| || ||||||| | ||| ||| |||||||||||    
T  34863964 gcttgtttttcaagctggatcgatgcaaaaaactcagttttctactcttaaaccctgagt-aatcatttgctataa 34863890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 12806502 - 12806445
Alignment:
Q  213 atttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    ||||||||||| | ||||||||||||   ||||||||||||||||||||| |||||||    
T  12806502 atttcttccttttgttgttctctctaggatatatttttctattgttttgttatgatgt 12806445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 1695474 - 1695399
Alignment:
Q  186 ggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    |||||| ||||| |||||||||| || ||| |||| ||||||||||||||| |  |||| |||||||||||||||||    
T  1695474 ggttaatcatcaaagttttaaggcagaatt-cttcattctcttgttctctcgagggtatgtttttctattgttttgt 1695399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 27303131 - 27303195
Alignment:
Q  51 tttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaa 115  Q
    |||||||||||| |||||||||||  |||| ||| | |||||||||||| ||||||| |||||||    
T  27303131 tttgcttgttttccaagctggatcggtgcagaaagcccaattttcttctcttaaaccctaagtaa 27303195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 5676735 - 5676818
Alignment:
Q  190 aagcatcagagttttaaggtagga---tttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||||||||| |||||||     |||| |||| |||||||||| ||||  |||| ||||||||||||||||| |||||||    
T  5676735 aagcatcagagtttcaaggtagataattttcatcctcctcttgttctttctatggtatgtttttctattgttttgtaatgatgt 5676818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 29438001 - 29438050
Alignment:
Q  222 ttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||||| ||||||  |||| ||||||||||||||||| ||||||||    
T  29438001 ttctcttgttatctctagggtatgtttttctattgttttgtaatgatgtc 29438050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 25314948 - 25314884
Alignment:
Q  51 tttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaa 115  Q
    |||||||||||| |||||||||||  || ||||   ||| ||||||||| |||||||||||||||    
T  25314948 tttgcttgttttccaagctggatcattggaaaatgttcagttttcttctcttaaaccttaagtaa 25314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 270
Target Start/End: Complemental strand, 5361 - 5223
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgtt 231  Q
    |||||||||||||| || ||||||||||| ||||  |   |||||||||| || ||| ||||||||||| || |||| ||||||||||| ||||||||||    
T  5361 agagacccttgcactcattattattcattaagaacactgacggttcaaggcaagggtcaagcatcagagcttcaaggcaggatttcttcattctcttgtt 5262  T
Q  232 ctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||   ||| ||||||||||||||||| |||||||    
T  5261 ctctctaggatatgtttttctattgttttgttatgatgt 5223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 9070845 - 9071048
Alignment:
Q  64 caagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttag 163  Q
    ||||||||||   |||||||| | ||| |||||||| ||||| | ||||||| |  ||| ||||||  ||||||||||||||  | ||||||||||| |     
T  9070845 caagctggattggtgcaaaaagcacaaatttcttctcttaaaacctaagtaa-tccttttctataaatagagacccttgcacttattattattcattcaa 9070943  T
Q  164 aaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtg 263  Q
    ||  ||  |||||||||| ||  || ||||||||||| || |||| | ||||||||||||||||| |||||||||| |||| |||||||||||||||||     
T  9070944 aacaccgacggttcaaggaaaatgtcaagcatcagagcttcaaggcatgatttcttccttctcttcttctctctaaggtatgtttttctattgttttgtt 9071043  T
Q  264 atgat 268  Q
    |||||    
T  9071044 atgat 9071048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 7142525 - 7142656
Alignment:
Q  119 atttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttct 218  Q
    |||||||||||  |||||| ||||||| || ||||||||||||||||  |   |||||||||  || ||| || ||| |||| || |||| | |||||||    
T  7142525 atttgctataaatagagactcttgcactcattattattcatttagaacactgacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 7142624  T
Q  219 tccttctcttgttctctctaatgtatattttt 250  Q
    ||||||||||||||||||||  ||||||||||    
T  7142625 tccttctcttgttctctctagggtatattttt 7142656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 4092116 - 4092048
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagag 200  Q
    |||||||||| |||||| ||||||||||| ||||||| ||||||| |||| || ||| |||||||||||    
T  4092116 agagaccctttcacacattattattcattcagaaagctagcggttgaaggcaagggtcaagcatcagag 4092048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 20470382 - 20470330
Alignment:
Q  150 tattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagtt 202  Q
    ||||||||||||||||||| |||||||||||  || |||||||||||||||||    
T  20470382 tattattcatttagaaagctagcggttcaagtcaagggttaagcatcagagtt 20470330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 9552727 - 9552774
Alignment:
Q  224 ctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||    
T  9552727 ctcttgttctctctagggtatatttttctattattttgtgatgatgtc 9552774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 269
Target Start/End: Complemental strand, 21545524 - 21545344
Alignment:
Q  88 caattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatgg 187  Q
    |||||||||||| |||| || ||||| ||| |||| ||||||  |||||||| | |||||| |||||||| || ||||||| |||| ||||||  || ||    
T  21545524 caattttcttctcttaacccctaagt-aatcattttctataaatagagacccgtacacacattattattctttcagaaagctagcgcttcaagtcaaggg 21545426  T
Q  188 ttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatg 269  Q
    | || ||||| || | ||| |  ||||| | |  | |||||||||||||||  |||| ||||| ||||||||||| ||||||    
T  21545425 tcaaacatcaaagatctaatggtggattccattatcctcttgttctctctagggtatgtttttatattgttttgttatgatg 21545344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 270
Target Start/End: Original strand, 5636691 - 5636833
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtag--gat-ttcttccttctctt 228  Q
    ||||||||||||||||| | ||||||||| ||||||| ||  || ||||| |||||| |||||||| || || |||| ||  ||| | |  ||| |||||    
T  5636691 agagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaatggtcaagcatcaaagcttcaaggcagatgatctccaacctcctctt 5636790  T
Q  229 gttctctctaatgtatatttttc-tattgttttgtgatgatgt 270  Q
    ||||||||||  |||| |||||| ||||||||||| |||||||    
T  5636791 gttctctctagggtatttttttcttattgttttgtaatgatgt 5636833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 7777635 - 7777580
Alignment:
Q  215 ttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||| |||||||||||||||||  |||| ||||||||||||||| | |||||||    
T  7777635 ttcttcattctcttgttctctctagggtatgtttttctattgttttattatgatgt 7777580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 10253415 - 10253352
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcat 195  Q
    ||||||||||| ||||| ||||||||||| ||||||   ||||||||||| || ||||||||||    
T  10253415 agagacccttgaacacattattattcattcagaaaggtcgcggttcaaggaaaaggttaagcat 10253352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 26839776 - 26839717
Alignment:
Q  172 cggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgtt 231  Q
    |||||||||| || ||| ||||||||||| || |||| ||||||||||| ||||||||||    
T  26839776 cggttcaaggcaagggtcaagcatcagagcttcaaggcaggatttcttcattctcttgtt 26839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 7815855 - 7815924
Alignment:
Q  190 aagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgtttt 260  Q
    ||||||||||||||||||| ||||| | | |||||| |||||| |||||  |||| |||||||||||||||    
T  7815855 aagcatcagagttttaaggcaggatatat-ccttcttttgttcactctagggtatgtttttctattgtttt 7815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 9405418 - 9405347
Alignment:
Q  195 tcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||| || |||| ||||||| |||||||||||||||||||    ||||  |||||||||||||||| |||||||    
T  9405418 tcagagcttcaaggcaggatttattccttctcttgttctctc----gtatgattttctattgttttgttatgatgt 9405347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 5312317 - 5312265
Alignment:
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||| |||||||||||||||  |||| |||||| |||||||||| ||||||||    
T  5312317 tcctcctcttgttctctctagggtatgtttttcaattgttttgtaatgatgtc 5312265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 7777798 - 7777695
Alignment:
Q  51 tttgcttgttttt-caagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaa 149  Q
    ||||||||||||| |||||| | || ||||||||| |||| ||||||| | ||||||| ||||| ||  || ||||||||  | |||||||||||||||     
T  7777798 tttgcttgttttttcaagcttggtccatgcaaaaagctcagttttcttatcttaaaccctaagt-aaccatatgctataaataaagacccttgcacacat 7777700  T
Q  150 tatta 154  Q
    |||||    
T  7777699 tatta 7777695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 9760684 - 9760728
Alignment:
Q  227 ttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    ||||||||||||| |||| |||||||||| |||||| ||||||||    
T  9760684 ttgttctctctaaggtatgtttttctattattttgtaatgatgtc 9760728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 11984924 - 11984708
Alignment:
Q  55 cttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatatta 154  Q
    |||||||| |||||||||||  || |||||| ||  |||||||||||||||||  |||||| | || || ||||| || |||| |||||||||| | |||    
T  11984924 cttgttttccaagctggatcggtggaaaaatgtcggttttcttcttttaaaccgcaagtaa-tcatatgttataaaaatagacacttgcacacattctta 11984826  T
Q  155 ttcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaagg--taggat-ttcttccttctcttgttctctctaatgtatatttttc 251  Q
    |||||| ||||||| | |||| ||||| ||  || ||||||||||| |  ||||   ||||| | | |||| ||||||||||||||||  ||||||||||    
T  11984825 ttcattcagaaagctaacggtgcaaggcaaatgtcaagcatcagag-tccaaggcagaggatctccatcctcctcttgttctctctaagatatatttttc 11984727  T
Q  252 tattgttttgtgatgatgt 270  Q
    | |||||||| ||||||||    
T  11984726 ttttgttttgcgatgatgt 11984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 9353371 - 9353579
Alignment:
Q  54 gcttgtttttcaagctggatctatgcaaaaatctc-aattttcttcttttaaaccttaagtaaattatttgctata-ataagagacccttgcacacaata 151  Q
    |||||||||||||| ||||||  ||||||||  || ||||||||||| ||||| | ||||||| | |||| ||||| |||| |||||||||||| || ||    
T  9353371 gcttgtttttcaagttggatcggtgcaaaaaaatccaattttcttctcttaaatcctaagtaa-tcattttctatatataa-agacccttgcactcatta 9353468  T
Q  152 ttattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttc 251  Q
    || |||||| | ||||    || ||||||  || ||| || |||||||||||| ||||| |||||||||||  |||||||| || ||  |||| ||||||    
T  9353469 tttttcattcaaaaagttgacgattcaagacaagggtcaaacatcagagtttttaggtatgatttcttcctcttcttgttccctttagggtatgtttttc 9353568  T
Q  252 tattgttttgt 262  Q
    |||||||||||    
T  9353569 tattgttttgt 9353579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 23519436 - 23519224
Alignment:
Q  55 cttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatatta 154  Q
    ||||||||||||| |||||   |||||||| | |||||||||||| |||||||  |||| ||  || ||||||||  ||||||||||||||||| |||      
T  23519436 cttgtttttcaagttggattagtgcaaaaaacacaattttcttctcttaaacccaaagt-aaccatatgctataaatagagacccttgcacacattatag 23519338  T
Q  155 ttcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctat 254  Q
    |||||||||||      ||| || ||| || ||| || ||| |||| || || |||||| ||||||||||||||||||||| ||   ||| |||||||||    
T  23519337 ttcatttagaacattgacgg-tctaggcaagggtcaaacattagagcttcaacgtagga-ttcttccttctcttgttctctttagactatgtttttctat 23519240  T
Q  255 tgttttgtgatgatgt 270  Q
    |||||||| |||||||    
T  23519239 tgttttgttatgatgt 23519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 25726371 - 25726222
Alignment:
Q  52 ttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaata 151  Q
    ||||||| ||||||||||||||   || ||||| |||  ||||||||| ||||||| ||||||| | || || |||||  | ||||| || |||||| ||    
T  25726371 ttgcttgattttcaagctggattggtggaaaaaactctgttttcttctcttaaaccctaagtaa-tcatatgttataaacaaagacctttacacacatta 25726273  T
Q  152 ttattcatttagaaagccagcggttcaaggtaatggttaagcatcagagtt 202  Q
    ||||||||| ||||||| ||||||||||| ||  ||| |||||||| ||||    
T  25726272 ttattcattcagaaagctagcggttcaagataggggtcaagcatcaaagtt 25726222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 25734779 - 25734630
Alignment:
Q  52 ttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaata 151  Q
    ||||||| ||||||||||||||   || ||||| |||  ||||||||| ||||||| ||||||| | || || |||||  | ||||| || |||||| ||    
T  25734779 ttgcttgattttcaagctggattggtggaaaaaactctgttttcttctcttaaaccctaagtaa-tcatatgttataaacaaagacctttacacacatta 25734681  T
Q  152 ttattcatttagaaagccagcggttcaaggtaatggttaagcatcagagtt 202  Q
    ||||||||| ||||||| ||||||||||| ||  ||| |||||||| ||||    
T  25734680 ttattcattcagaaagctagcggttcaagataggggtcaagcatcaaagtt 25734630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 26658020 - 26658107
Alignment:
Q  174 gttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    |||||||| || ||| ||||||||||| || |||| | ||||||||| |||||||||||||||||  |||| ||||| |||||||||||    
T  26658020 gttcaaggcaagggtcaagcatcagagcttcaaggaatgatttcttcattctcttgttctctctagggtatgttttt-tattgttttgt 26658107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 12810571 - 12810681
Alignment:
Q  54 gcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatatt 153  Q
    |||||||||||||||||||||  |||||||  | || |||||||||| |||||| | ||| |||||||| ||||||  ||| || |||||||| | ||||    
T  12810571 gcttgtttttcaagctggatcggtgcaaaatgcccagttttcttcttctaaaccct-agttaattattttctataaatagaaactcttgcacatattatt 12810669  T
Q  154 attcatttagaa 165  Q
    ||||||| ||||    
T  12810670 attcattcagaa 12810681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 9328547 - 9328616
Alignment:
Q  193 catcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    ||||||||||||| |||| |||||||||||  |||||||| || ||  |||| |||||||||||||||||    
T  9328547 catcagagttttagggtatgatttcttcctcttcttgttccctatagggtatgtttttctattgttttgt 9328616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 21549225 - 21549277
Alignment:
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||| |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  21549225 tcctcctcttgttctctctagggtatgtttttctattgttttgtaatgatgtc 21549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 9252247 - 9252162
Alignment:
Q  175 ttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgtttt 260  Q
    ||||||| || ||| || ||||||||||||| |||| |||||||||||  ||||||||  | ||  |||| |||||||||||||||    
T  9252247 ttcaaggcaagggtcaaacatcagagttttagggtatgatttcttcctcttcttgttccatatatggtatgtttttctattgtttt 9252162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 262
Target Start/End: Complemental strand, 8402 - 8226
Alignment:
Q  88 caattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatgg 187  Q
    |||||||||||| || |||| ||||||| | || ||||||||  ||||||||||||| ||| | ||||||||| ||||||| |  | | ||| | || ||    
T  8402 caattttcttctctttaaccctaagtaa-taatatgctataaatagagacccttgcagacatttttattcattcagaaagctaatgttacaacgcaaggg 8304  T
Q  188 ttaagcatcagagttttaaggtag--gatttct-tccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    | |||||||||||||  |||||||  ||| ||  |||| ||||||||||||||| ||||| |||||||||||||||||    
T  8303 tcaagcatcagagttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgttttgt 8226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 11399 - 11256
Alignment:
Q  122 tgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtag--gatttct- 218  Q
    ||||||||  ||||||||||||||| | | ||||||||| ||||||| | || | ||||| || ||| |||||||| ||||  |||||||  ||| ||      
T  11399 tgctataaatagagacccttgcacatatttttattcattcagaaagctaacgttacaaggcaagggtcaagcatcaaagttccaaggtagaggatatcca 11300  T
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||    
T  11299 tcctcctcttgttctctctagtgtatgtttttctattgttttgt 11256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 2729201 - 2729079
Alignment:
Q  151 attattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggta---ggatttcttccttctcttgttctctctaatgtatatt 247  Q
    |||||||||| ||||||| || |||||||||||| ||| |||||||||||||  |||| |   ||  ||| ||||  ||||||||||||||  |||||||    
T  2729201 attattcattcagaaagctagaggttcaaggtaagggtcaagcatcagagttcaaaggcagatggtcttcatcctcatcttgttctctctatggtatatt 2729102  T
Q  248 tttctattgttttgtgatgatgt 270  Q
    |||||| |||||||| |||||||    
T  2729101 tttctactgttttgttatgatgt 2729079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 18066186 - 18066293
Alignment:
Q  160 ttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttt 259  Q
    ||||||||| ||  |||||||| |||| | |||||||| || || || |||||||||| |||| |||||||||||| ||  |||| ||||||||||||||    
T  18066186 ttagaaagctagaagttcaaggcaatgctcaagcatcataggttcaaagtaggatttcctcctcctcttgttctctatagagtatctttttctattgttt 18066285  T
Q  260 tgtgatga 267  Q
    ||| ||||    
T  18066286 tgttatga 18066293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 270
Target Start/End: Original strand, 10342201 - 10342383
Alignment:
Q  91 ttttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggtta 190  Q
    ||||||||| ||||||| ||||||| | |||| ||||||  | |||| |||||||| | ||||||| ||| ||||||  || ||||||| |  | ||| |    
T  10342201 ttttcttctcttaaaccctaagtaa-tcatttactataaatatagactcttgcacatattattattaattcagaaagttagtggttcaaagcgagggtca 10342299  T
Q  191 agcatcagagtttt-aaggtag--gatttct-tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    | |||||||||||| |||| ||  ||||||  |||| |||||||||||||||  ||||||||||||||| |||||| |||||||    
T  10342300 aacatcagagttttcaaggcagatgatttccatcctcctcttgttctctctagggtatatttttctattattttgttatgatgt 10342383  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 33578242 - 33578298
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggt 188  Q
    |||||| |||||||||| | ||||||||||||||||| |||||||||||| ||||||    
T  33578242 agagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggt 33578298  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 19218862 - 19218752
Alignment:
Q  91 ttttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggtta 190  Q
    ||||||||| ||||||||||||||| | || | ||||||  ||||||||||| ||||| | ||||||||| | ||||| | |||||||||  || ||| |    
T  19218862 ttttcttctcttaaaccttaagtaa-tcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaagggtca 19218764  T
Q  191 agcatcagagtt 202  Q
    ||||||||||||    
T  19218763 agcatcagagtt 19218752  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 16970881 - 16970958
Alignment:
Q  80 aaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacacaatattattca 158  Q
    ||||| |||||||||||||| ||||||| ||||| ||| || ||||||||  |||||||||| |||||| | |||||||    
T  16970881 aaaaaactcaattttcttctcttaaaccctaagt-aatcatatgctataaatagagacccttacacacacttttattca 16970958  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 27415683 - 27415737
Alignment:
Q  208 gtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgt 262  Q
    |||||||||| |||| ||||||||||||||   |||| |||||||||||||||||    
T  27415683 gtaggatttcctcctcctcttgttctctctggggtatctttttctattgttttgt 27415737  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 13911823 - 13911919
Alignment:
Q  174 gttcaaggtaatggttaagcatcagagttttaaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    |||||||| || ||| ||| |||| || || |||| | ||||| |||||||||||||||||| ||  ||||  |||||||||||||||  |||||||    
T  13911823 gttcaaggcaagggtcaagtatcatagcttcaaggcatgattttttccttctcttgttctctatagggtatggttttctattgttttgatatgatgt 13911919  T

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Target: scaffold0171 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 6710 - 6762
Alignment:
Q  150 tattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagtt 202  Q
    |||| |||||||||||||| | |||||||||| ||||||||||||||||||||    
T  6710 tattgttcatttagaaagctaacggttcaaggcaatggttaagcatcagagtt 6762  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 11210 - 11159
Alignment:
Q  214 tttcttccttctcttgttctctctaatgtatatttttctattgttttgtgat 265  Q
    |||| |||| ||| |||||||||||| |||||||||||||||||||||||||    
T  11210 tttcatcctcctcatgttctctctaaggtatatttttctattgttttgtgat 11159  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 31274414 - 31274461
Alignment:
Q  224 ctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||    
T  31274414 ctcttgttctctctagagtatatttttctattgttttgtaatgatgtc 31274461  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 270
Target Start/End: Complemental strand, 17884193 - 17884052
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaagg--taggatttct-tccttctctt 228  Q
    ||||||| ||||||| | | ||||||||||||||||| ||  || ||||| || ||| ||||||||||| || ||||   ||||||||| || | |||||    
T  17884193 agagaccattgcacatacttttattcatttagaaagctagtagtacaaggcaagggtcaagcatcagagattcaaggcagaggatttctgtcatcctctt 17884094  T
Q  229 gttctctctaatgtatatttttctattgttttgtgatgatgt 270  Q
    || || ||||  |||| ||||||||||||||||| |||||||    
T  17884093 gtcctttctagggtatgtttttctattgttttgtaatgatgt 17884052  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 21504203 - 21504066
Alignment:
Q  136 acccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcagagttttaaggtag--gat-ttcttccttctcttgttc 232  Q
    |||||| |||||| | ||||||||||||||||| |  ||||||||| || ||| |||||||| ||||  |||||||  ||| ||| |||| || ||||||    
T  21504203 acccttacacacacttttattcatttagaaagctaatggttcaaggaaaaggtcaagcatcaaagttccaaggtagatgatcttcatcctcctattgttc 21504104  T
Q  233 tctctaatgtatatttttctattgttttgtgatgatgt 270  Q
     |||||| |||| |||||||||| |||| | |||||||    
T  21504103 actctaaagtatgtttttctattattttataatgatgt 21504066  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 27917652 - 27917586
Alignment:
Q  132 agagacccttgcacacaatattattcatttagaaagccagcggttcaaggtaatggttaagcatcag 198  Q
    |||||||||||||||| || ||||||||| ||||||| |||||| ||||| || ||| |||||||||    
T  27917652 agagacccttgcacactattttattcattcagaaagctagcggtacaaggcaagggtcaagcatcag 27917586  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 25460501 - 25460545
Alignment:
Q  224 ctcttgttctctctaatgtatatttttctattgttttgtgatgat 268  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  25460501 ctcttgttctctctagtgtatgtttttctattgttttgtaatgat 25460545  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 21844533 - 21844383
Alignment:
Q  49 agtttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaaattatttgctataataagagacccttgcacaca 148  Q
    ||||||||||||||||||| | ||||  || ||||| | || ||||||||| ||||||| ||||||| | |||   |||||  ||| |||| ||||||||    
T  21844533 agtttgcttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaa-taattcaatataaatagaaacccctgcacaca 21844435  T
Q  149 atattattcatttagaaagccagcggttcaaggtaatggttaagcatcagag 200  Q
     | ||||| ||| || |||| |||||||||||| |  ||| |||||||||||    
T  21844434 cttttatttattcagtaagctagcggttcaaggcatgggtcaagcatcagag 21844383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 14921627 - 14921575
Alignment:
Q  219 tccttctcttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    ||||||| ||||||||||||  |||| |||||| |||||||||| ||||||||    
T  14921627 tccttctattgttctctctagggtatgtttttcaattgttttgtaatgatgtc 14921575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 16593482 - 16593418
Alignment:
Q  51 tttgcttgtttttcaagctggatctatgcaaaaatctcaattttcttcttttaaaccttaagtaa 115  Q
    |||||||||||||||||||||||| | | | ||| | |||||||||||| |||| || |||||||    
T  16593482 tttgcttgtttttcaagctggatcgacggataaagcccaattttcttctattaatccctaagtaa 16593418  T

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Target: scaffold0282 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 22171 - 22108
Alignment:
Q  205 aaggtaggatttcttccttctcttgttctctctaatgtatatttttctattgttttgtgatgat 268  Q
    |||| ||||||||||||||||||| ||||||| |  |||||| ||| ||||||||||| |||||    
T  22171 aaggcaggatttcttccttctcttattctctccagggtatatatttttattgttttgttatgat 22108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 8233 - 8273
Alignment:
Q  219 tccttctcttgttctctctaatgtatatttttctattgttt 259  Q
    ||||||||||||||||||||  |||| ||||||||||||||    
T  8233 tccttctcttgttctctctagggtatttttttctattgttt 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 33275 - 33231
Alignment:
Q  227 ttgttctctctaatgtatatttttctattgttttgtgatgatgtc 271  Q
    ||||||||||||  |||| ||||||||||||||||| ||||||||    
T  33275 ttgttctctctagagtatctttttctattgttttgtaatgatgtc 33231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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